 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
497373 |
| Common Name | ARALYDRAFT_497373 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
MYB |
| Protein Properties |
Length: 415aa MW: 46682.9 Da PI: 8.8149 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 497373 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.8 | 5e-18 | 105 | 151 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +l+++v+q+G + W++I++++ gR +kqc++rw+++l
497373 105 KGQWTAEEDRKLIRLVRQHGERKWALISEKLE-GRAGKQCRERWHNHL 151
799*****************************.*************97 PP
|
| 2 | Myb_DNA-binding | 47.6 | 3.8e-15 | 158 | 199 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ W++eE++ lv+ + + G++ W+ Ia+ ++ gRt++++k++w+
497373 158 DGWSEEEEKVLVESHMRIGNK-WAEIAKLIP-GRTENSIKNHWN 199
56*******************.*********.***********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MEDRRLVHGA VPPLTAVERF LYGQKNDVLC SKKKECSRDR PIVKTKMSIE TRSDNKENTT 60
FGPTREKHLV LNGGNRSPIG ELVARSAARD YQNSTKKRSY KNLIKGQWTA EEDRKLIRLV 120
RQHGERKWAL ISEKLEGRAG KQCRERWHNH LRPNIKKDGW SEEEEKVLVE SHMRIGNKWA 180
EIAKLIPGRT ENSIKNHWNA TKRRQNSKRK HKRESNADNN DTDTTSKASG VMDINKNNDE 240
NTISVLSTPN LDQIYSDGDS ASSMLGDPYD EELVYLQNIF ANHPISLENI GLSQTSDEVT 300
QSSATGFMTK NPKPNLHNNV GTHHQEAAIT APANTPHLAS DIYLSYLLNG TTPSYSDTHF 360
PSSSSSTSST TVEHGGRNEF LEPQANSTSE RREMDLIEML SGSIQGSNIC FPLF*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 1e-43 | 103 | 205 | 2 | 104 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 4e-43 | 103 | 205 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 4e-43 | 103 | 205 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 1e-43 | 103 | 205 | 2 | 104 | C-Myb DNA-Binding Domain |
| 1msf_C | 1e-43 | 103 | 205 | 2 | 104 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 201 | 212 | KRRQNSKRKHKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF371978 | 0.0 | AF371978.1 Arabidopsis thaliana putative transcription factor MYB119 (MYB119) mRNA, complete cds. |
| GenBank | DQ447091 | 0.0 | DQ447091.1 Arabidopsis thaliana clone pENTR221-At5g58850 myb family transcription factor (At5g58850) mRNA, complete cds. |
| GenBank | DQ653380 | 0.0 | DQ653380.1 Arabidopsis thaliana clone 0000013309_0000009608 unknown mRNA. |
