PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496768
Common NameARALYDRAFT_496768
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41705.5 Da    PI: 8.9743
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496768genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.74e-25857251
            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            +++++s++++++++R+++i+KKA ELS+LC++ev+vi++++ g+l+++++
  496768  8 SSSSSSRNSTSLTNRLKTIFKKALELSILCAIEVCVIYYGPGGELKTWPK 57
            799*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.498159IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-4258IPR002100Transcription factor, MADS-box
PfamPF003196.0E-131155IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-151291IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKQASFSSSS SSSRNSTSLT NRLKTIFKKA LELSILCAIE VCVIYYGPGG ELKTWPKERE  60
TVKDMALRYK EARKRKKSLN LHEFLDKEKD KDKDKDKGKT NLKKKQKKNV KYHDWYPNFD  120
HYSPHQLSQL NQSLEQTLST LQERLRFVEA QKQQNINLVD QNLTPSYLNQ NQHLNPSKFS  180
LYMYNHGDAT LSQLPLSASH SDQLTNYQNH LMQQQELYGF GQNLCLGNIT NTNFQRPYVS  240
NTQDYSPLLS AQASVVNNYG LNNHSMQKQD LHGIDRNVCM LSEIINNNNN NDLQHPNLSN  300
KIPHEFSSDF QQNPYFNTVG NTSFSQDMFS SYDASSLHQT SSLPPLHNIP NSYCFSDNSR  360
LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap496768
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864952.10.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL04e-73AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLD7MTX20.0D7MTX2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__2584__AT5G65330.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.11e-178AGAMOUS-like 78
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]