PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496754
Common NameARALYDRAFT_496754
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 310aa    MW: 35072.4 Da    PI: 6.2961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496754genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+++++++G  +W++ ++  g++R++k+c++rw +yl
           496754 14 KGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.92e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
           496754  67 RGKFSAEEEETILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.704961IPR017930Myb domain
SuperFamilySSF466898.61E-3011108IPR009057Homeodomain-like
SMARTSM007174.7E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-241568IPR009057Homeodomain-like
CDDcd001676.82E-111661No hitNo description
PROSITE profilePS5129426.98762116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-2869117IPR009057Homeodomain-like
CDDcd001673.53E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRSPSSDET GLKKGPWLPE EDDKLINYIH KHGHSSWSAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SAEEEETILN LHAVLGNKWS MIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DDIFSSLSQL MSLSNLRGLV DLQQQFPIED HARMNLQTEM AKLQLFHYLL  180
QSPPPPSNIN PNDLNILNLL IKENSNTNTL DLGFLTSHLQ DINNNLPSLK TLEENHFSQN  240
TSPIWLHEPP SLNQTMLPTH DPCAQSVDGF SGNQASSSHD QEVAVTDSVD WPDHHLFDGS  300
MFPDISYQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap496754
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196460.0AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871777.10.0transcription factor MYB8
RefseqXP_020871778.10.0transcription factor MYB8
RefseqXP_020871779.10.0transcription factor MYB8
RefseqXP_020871781.10.0transcription factor MYB8
RefseqXP_020871782.10.0transcription factor MYB8
RefseqXP_020871783.10.0transcription factor MYB8
RefseqXP_020871784.10.0transcription factor MYB8
RefseqXP_020871785.10.0transcription factor MYB8
RefseqXP_020871786.10.0transcription factor MYB8
RefseqXP_020871787.10.0transcription factor MYB8
RefseqXP_020871788.10.0transcription factor MYB8
RefseqXP_020871789.10.0transcription factor MYB8
RefseqXP_020871790.10.0transcription factor MYB8
SwissprotQ9FJP20.0MYB53_ARATH; Transcription factor MYB53
TrEMBLD7MT960.0D7MT96_ARALL; AtMYB53
STRINGfgenesh2_kg.8__2570__AT5G65230.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.10.0myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]