PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496441
Common NameARALYDRAFT_496441
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 283aa    MW: 30596.8 Da    PI: 6.0652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496441genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-11165211555
             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  496441 165 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 211
             999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.77E-10158215No hitNo description
SuperFamilySSF474596.41E-17158225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.18160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17161225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS EHSGNKDVSA  60
AEESTVTDLT AGWGGRKTRD LNSEDDSSKM VSSSSSGNEL KESGDKKRKL CGSESGNGDG  120
SMRPEGETSS GGGGGSKATE QKNKPEPPKD YIHVRARRGQ ATDRHSLAER ARREKISEKM  180
TALQDIIPGC NKIIGKALVL DEIINYIQSL QRQVEFLSMK LEVVNSGAST GPTIGVFPSG  240
DLGTLPIDVH RTIYEQQEAN ETRVSQPEWL HMQVDGNFNR TT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199108LKESGDKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap496441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721040.0AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845780.0AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230230.0AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877892.10.0transcription factor bHLH79
SwissprotQ9LV170.0BH079_ARATH; Transcription factor bHLH79
TrEMBLD7MMC60.0D7MMC6_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.8__2257__AT5G62610.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]