PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496230

Common Name

ARALYDRAFT_496230

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 195aa MW: 22587 Da PI: 6.7455

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496230	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.4	3.7e-14	68	127	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e +r+rr+ +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + e 496230 68 EERRARRMVSNRESARRSRMRKKKQIEELQQQVEQLMMLNHHLHEKVINLLESNHQILHE 127 678******************************************998888777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-13	66	130	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.277	68	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.6E-13	68	128	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-11	70	124	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.4E-12	70	124	No hit	No description
CDD	cd14702	2.67E-16	71	122	No hit	No description
PROSITE pattern	PS00036	0	73	88	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MESSSVHRSH CFDILDGVPL QDDHFSSAFL PNTDFNVQLN SISTRNNNQS HLDPNAENIF 60 HNEGLAPEER RARRMVSNRE SARRSRMRKK KQIEELQQQV EQLMMLNHHL HEKVINLLES 120 NHQILHENSQ LKEKVSSFHL LMADVLLPMR NAESNINDRN VNYLRGETSN RPTNSSFGND 180 YYTSNYLNLY VDNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496230

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB015472	0.0	AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020877227.1	1e-135	LOW QUALITY PROTEIN: basic leucine zipper 43
TrEMBL	D7MUE4	1e-139	D7MUE4_ARALL; BZIP transcription factor family protein
STRING	fgenesh2_kg.8__2046__AT5G60830.1	1e-140	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	1e-106	basic leucine-zipper 70

Link Out ? help Back to Top
Phytozome	496230
Entrez Gene	9300782