PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 496218 | ||||||||
Common Name | ARALYDRAFT_496218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 845aa MW: 92485.2 Da PI: 5.9515 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR ++k+ 496218 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECsilaNIEPKQIKVWFQNRRCRDKQ 83 56789***************************************************996 PP | |||||||
2 | START | 153.1 | 2.4e-48 | 162 | 367 | 2 | 202 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqals 102 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l +++++a++ 496218 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPM-KIAEILKDRPSWFRDCRSLEVFTLFPAGngGTIELVYMQTYAPT 263 7899******************************************************.7777777777*******9998888887778************** PP -SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTX CS START 103 plvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlq 201 +l+p Rdf+++Ry+ +l g++v++++S++ p+ s++vRae+l Sg+li+p+++g+s +++v+h +l++++++ +lr+l++s+ + ++k++ ++l+ 496218 264 TLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNaasASQFVRAEMLSSGYLIRPCDGGGSIIHIVDHLNLEAWSVPDVLRPLYESSKVVAQKMTISALR 366 ******************************999999989999********************************************************99998 PP X CS START 202 r 202 + 496218 367 Y 367 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.305 | 20 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-16 | 21 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-16 | 22 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.24E-16 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 1.3E-15 | 26 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.26E-6 | 77 | 116 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.9E-4 | 81 | 130 | No hit | No description |
PROSITE profile | PS50848 | 27.103 | 152 | 380 | IPR002913 | START domain |
CDD | cd08875 | 1.22E-66 | 156 | 372 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.0E-19 | 160 | 365 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.3E-34 | 161 | 373 | No hit | No description |
SMART | SM00234 | 3.5E-38 | 161 | 371 | IPR002913 | START domain |
Pfam | PF01852 | 5.2E-46 | 162 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 3.8E-49 | 696 | 843 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS 60 ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM NKLLMEENDR LQKQVSQLVC 120 ENGYMKQQLT TVVCNDPSCE SVVTTPQHSL RDASSPAGLI SIAEETLAEF LSKATGTAVD 180 WVQMPGMKPG PDSVGIFAIS QRCSGVAARA CGLVSLEPMK IAEILKDRPS WFRDCRSLEV 240 FTLFPAGNGG TIELVYMQTY APTTLAPARD FWTLRYTTSL DNGSFVVCER SLSGSGAGPN 300 AASASQFVRA EMLSSGYLIR PCDGGGSIIH IVDHLNLEAW SVPDVLRPLY ESSKVVAQKM 360 TISALRYIRQ LAQETNGEVV YGLGRQPAVL RTFSQRLSRG FNDAVNGFGD DGWSTMHCDG 420 AEDIIVAINS TKHLNNISNS LSFLGGVLCA KASMLLQNVP PAVLIRFLRE HRSEWADFNV 480 DAYSAATLKA GTFAYPGMRP TRFTGSQIIM PLGHTIEHEE MLEVVRLEGH SLAQEDAFMS 540 RDVHLLQICT GIDENAVGAC SELIFAPINE MFPDDAPLVP SGFRVIPVDA KTGDAQDLLT 600 ANHRTLDLTS SLEVGPSPEN ASGNSSSSSS SSRCILTIAF QFPFENNLQE NVAGMACQYV 660 RSVISSVQRV AMAVSPSGIS PSLGSKLSPG SPEAVTLAQW ISQSYSHHLG SELMTIDSLG 720 SNDSVLKLLW DHQDAILCCS LKPQPVFMFA NQAGLDMLET TLVALQDITL EKIFDESGRK 780 ALCSDFAKLM QQGFACLPSG ICVSTMGRHV SYEQAVAWKV FAASEDNNNN LHCLAFSFVN 840 WSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 496218 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF188994 | 0.0 | AF188994.1 Arabidopsis thaliana homeodomain-leucine zipper protein interfascicular fiberless 1 (IFL1) mRNA, complete cds. | |||
GenBank | AF233592 | 0.0 | AF233592.1 Arabidopsis thaliana REVOLUTA mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020885782.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | D7MTW7 | 0.0 | D7MTW7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__2034__AT5G60690.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4779 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 496218 |
Entrez Gene | 9300774 |