PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 496153 | ||||||||
Common Name | ARALYDRAFT_496153 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 292aa MW: 33115 Da PI: 4.3467 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.2 | 3.9e-15 | 14 | 104 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk +ps ++ + l+lp f ++ ++k+ + t+ +++ g++W++ l rk++g+ +v+ +GWk+ v++ +Lk gD + F++dg+++f+l++ 496153 14 FFKPYLPSESG--DDLMLPIYFN-SC-LPKPLPETVNVRSIYGKVWKLVL--RKCGGEverFVMVNGWKKIVRDEDLKGGDLLAFEFDGSRCFNLCI 104 67777555555..5599999997.66.5677999****************..777766677***************************999997665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.04E-19 | 8 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-17 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.323 | 12 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.05E-14 | 14 | 105 | No hit | No description |
SMART | SM01019 | 4.4E-18 | 14 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-13 | 14 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:1.10.601.10 | 9.5E-4 | 108 | 189 | No hit | No description |
SuperFamily | SSF101936 | 1.06E-10 | 192 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-7 | 193 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.12 | 197 | 287 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MNHGNYSDGS TSKFFKPYLP SESGDDLMLP IYFNSCLPKP LPETVNVRSI YGKVWKLVLR 60 KCGGEVERFV MVNGWKKIVR DEDLKGGDLL AFEFDGSRCF NLCIYERETM CKKLKRSSEQ 120 SEEIIEVGSD GEEETLASDD SDDSDNDYAV EDDDVAEDDD GLEDEDEVEA EDDDDVKAED 180 DDDNDERQYL DHHNNPYFTM TLNPKKKSQL HIPAYVIKDY DLNFPARITV MDQLGALEKA 240 IKIQKNGSIF VKGFGSVIRR NKMKMTDKMI CELKRTGSNL VHTIKVNIIS G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-13 | 4 | 111 | 1 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 496153 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493802 | 1e-130 | AB493802.1 Arabidopsis thaliana At5g60140 mRNA for hypothetical protein, partial cds, clone: RAAt5g60140. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002866372.1 | 0.0 | B3 domain-containing protein At5g60140 | ||||
Swissprot | Q9FHB0 | 1e-150 | Y5014_ARATH; B3 domain-containing protein At5g60140 | ||||
TrEMBL | D7MT69 | 0.0 | D7MT69_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__1969__AT5G60140.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60140.1 | 1e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 496153 |
Entrez Gene | 9302446 |
Publications ? help Back to Top | |||
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