PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 494687
Common NameARALYDRAFT_494687, ARALYDRAFT_655156
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 225aa    MW: 25231.3 Da    PI: 6.3612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
494687genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-111491891055
             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             r+RR+riN+++ +L++l+P+      +K++ +++Le Av+Y+k Lq
  494687 149 RKRRERINDRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 189
             9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.831139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14144203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12145198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.12E-12148193No hitNo description
PfamPF000107.7E-9149189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAPNEFDVV SSSDDFFPFS KILQGNYAAV  60
LDGSNHQTNL YDDSRQELVK PRKKQKISSE SNLVTEPKTA WRDGQSLSNY NSSDDENALG  120
LVSNTSKSLK RKAKSNKGIA SDPQSLYARK RRERINDRLK TLQSLVPNGT KVDISTMLED  180
AVHYVKFLQL QIKLLSSDDL WMYALLAHNG LNMGLHHNIL SRLM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKRKAKS
2129151KRKAKSNKGIASDPQSLYARKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap494687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230301e-81AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBankCP0026881e-81CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862272.21e-166transcription factor bHLH139
RefseqXP_020888245.11e-166transcription factor bHLH139
SwissprotQ3E7L71e-149BH139_ARATH; Transcription factor bHLH139
TrEMBLD7MPZ81e-164D7MPZ8_ARALL; Basic helix-loop-helix family protein
STRINGAl_scaffold_0797_11e-165(Arabidopsis lyrata)
STRINGfgenesh2_kg.8__503__AT5G43175.11e-165(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.11e-141bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]