PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 494588
Common NameARALYDRAFT_494588
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 308aa    MW: 34236.4 Da    PI: 4.982
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
494588genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.22.8e-16224283261
             XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
             ++ +r+rr++kNRe+A rsR+RK+a++ eLe  +++Le+eN+ L ke+ee +ke ++  +
  494588 224 AAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEEKRKERYQKLM 283
             5789**********************************************9999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-13221278No hitNo description
SMARTSM003384.4E-12223287IPR004827Basic-leucine zipper domain
PfamPF001703.2E-15224284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.277225277IPR004827Basic-leucine zipper domain
CDDcd147072.19E-18227273No hitNo description
SuperFamilySSF579596.88E-10227279No hitNo description
PROSITE patternPS000360230245IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTSFQVMRST NSRNSDLSRS SIRPQQQFRR DLTSGGYGVR NDGLLYNSNS MTVEGILHDT  60
FASDPPAPTE SSLLDASITL MDASPAPMEI TTTVSDVVDH DGGGTETTRG GKSVDEVWRE  120
MVSGVGKGMK EETQEEIMTL EDFLAKAAVE DETATAEDLD VKIPPTTNYG FDYSAPPHNP  180
FQMIDKVEGS IVAFGNGLDV YGGGGSGGVR GKRARVMVEP LDKAAAQRQR RMIKNRESAA  240
RSRERKQAYQ VELEALAAKL EEENELLSKE IEEKRKERYQ KLMEFVIPVV EKPKQQPPRF  300
LRRIRSLE
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap494588
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864570.0AY086457.1 Arabidopsis thaliana clone 25211 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863613.20.0G-box-binding factor 4
SwissprotP427771e-65GBF4_ARATH; G-box-binding factor 4
TrEMBLD7MN320.0D7MN32_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.8__404__AT5G44080.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-136bZIP family protein