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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
493979 |
Common Name | ARALYDRAFT_493979 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
M-type_MADS |
Protein Properties |
Length: 297aa MW: 34104.4 Da PI: 8.9843 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
493979 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 77.8 | 7.7e-25 | 1 | 49 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
++++s +++++s+R+++i+KKA+EL++LCd++++vi+++++g+l+++++
493979 1 SSSYSLASTSLSNRLETIFKKASELCTLCDIKACVIYYGPDGELKTWPK 49
6899*******************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 297 aa
Download sequence Send
to blast |
SSSYSLASTS LSNRLETIFK KASELCTLCD IKACVIYYGP DGELKTWPKE REKVRDIALR 60 YSQLNEALRR KKRVNLYDFL NKKKEKGLKN PNKKRKTSLK KVNELKYPIS DHYSPDQISK 120 LIQSLELNVS KVQERLRFVE SQKHKETKPD HQSLASSSLN QQTQSLNPSQ FSLFMYNHGD 180 NTLSQIPVSA SNFNQDFSAL LQESEFKNPL VKQELCGYDQ NMCMSGITNN SFQHPCVSNK 240 EHYSAVQESV NNYELNQLLQ KEFYGCDQKL ISNINSNNFQ HPCVSNTQHN SAVQESV
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 81 | 95 | KKKEKGLKNPNKKRK |
2 | 82 | 94 | KKEKGLKNPNKKR |
3 | 87 | 95 | LKNPNKKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB010072 | 0.0 | AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6. |
GenBank | BT030016 | 0.0 | BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |