PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493759
Common NameARALYDRAFT_493759
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 301aa    MW: 32799 Da    PI: 6.2381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493759genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09216257955
             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  493759 216 AKNRRERISERLKVLQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 257
             69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.7E-12207265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.983207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-13209268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.78E-12209261No hitNo description
SMARTSM003533.8E-11213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6216257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSLINDHCNE PNYISNPTSS EDLSSPENFG LEGRASASSS STMNSDHQQN QGCVFYPSGE  60
SIEDHNSLMD FNASSFFSFD YHRSFISPVT NGGAFSVLEE NMSYGYTGWS HHQMDSISPR  120
VIKTSNSFET TSSFELTSNS RCKPATNHGN GDWLYSDSTI VNTGLRHESA SPKLAGNKRP  180
FTGDNTHLSK KPSSGTNGEA KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV  240
DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSTQRDSNSN  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMap493759
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168730.0AB016873.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K22F20.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868542.10.0putative transcription factor bHLH086
SwissprotQ9FJ000.0BH086_ARATH; Putative transcription factor bHLH086
TrEMBLD7MII20.0D7MII2_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.7__3192__AT5G37800.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-178RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  3. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]