PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

493420

Common Name

ARALYDRAFT_493420

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

CPP

Protein Properties

Length: 652aa MW: 71716.7 Da PI: 5.2078

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
493420	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	32.3	2e-10	362	388	14	40
TCR 14 lkkYCeCfaagkkCseeCkCedCkNke 40 +k YCeCfaag++C e C+C dC+Nk 493420 362 KKSYCECFAAGVYCIEPCSCIDCFNKP 388 599**********************96 PP
2	TCR	51.2	2.5e-16	435	473	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 493420 435 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 473 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	32.285	353	475	IPR005172	CRC domain
SMART	SM01114	5.5E-6	356	390	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.3E-7	363	387	IPR005172	CRC domain
SMART	SM01114	3.7E-17	435	476	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.0E-11	437	473	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MDTPQKSVTQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHNSS SSDPTNPVES REDESTSYED VVAEGEEDTK DLNIDSSMRE 120 EETNRDDSVS SPCGRDTTDL SLVPYAPRGE NGTSEDAGME LQKMYDNVQG KTETPDWESL 180 ISDASELLIF DSPDASEAFR CFMMQRASNS EARFSNGVEV QTMQPDSNKE PQSSDAIPYE 240 VHSGITSQAV SLLHRGIRRR CLDFEMPGNK QTNNAACESS SRCVVPSIGL HLNAILMSSK 300 DCKTNVSHDY SCSGKIQVGL QSSISTMQDT LDQTENEARE DADQDVPVEP ALQELNLSSP 360 KKKSYCECFA AGVYCIEPCS CIDCFNKPIH EDVVLATRKQ IESRNPLAFA PKVIRNSESV 420 LETGDDASKT PASARHKRGC NCKKSNCLKK YCECYQGGVG CSINCRCEGC KNAFGRKDGS 480 SNDMEAQQEE ENETSEKSRT AKVQQNTEVL MRKEARSDLP TTPTPIYRPE LVQIPFSSSK 540 NRMPPPQSLL GGRSSSGIFN SQYLRKPDIS LTQSRIKKSF ETVAEDGAEE MPEILIHSPI 600 PNIKSVSPNG KRVSPPHMES SSSGSILGRR SGGRKLILQS IPSFPSLTPQ H*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MDTPQKSVTQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHNSS SSDPTNPVES REDESTSYED VVAEGEEDTK DLNIDSSMRE  120
EETNRDDSVS SPCGRDTTDL SLVPYAPRGE NGTSEDAGME LQKMYDNVQG KTETPDWESL  180
ISDASELLIF DSPDASEAFR CFMMQRASNS EARFSNGVEV QTMQPDSNKE PQSSDAIPYE  240
VHSGITSQAV SLLHRGIRRR CLDFEMPGNK QTNNAACESS SRCVVPSIGL HLNAILMSSK  300
DCKTNVSHDY SCSGKIQVGL QSSISTMQDT LDQTENEARE DADQDVPVEP ALQELNLSSP  360
KKKSYCECFA AGVYCIEPCS CIDCFNKPIH EDVVLATRKQ IESRNPLAFA PKVIRNSESV  420
LETGDDASKT PASARHKRGC NCKKSNCLKK YCECYQGGVG CSINCRCEGC KNAFGRKDGS  480
SNDMEAQQEE ENETSEKSRT AKVQQNTEVL MRKEARSDLP TTPTPIYRPE LVQIPFSSSK  540
NRMPPPQSLL GGRSSSGIFN SQYLRKPDIS LTQSRIKKSF ETVAEDGAEE MPEILIHSPI  600
PNIKSVSPNG KRVSPPHMES SSSGSILGRR SGGRKLILQS IPSFPSLTPQ H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-11	390	472	49	120	Protein lin-54 homolog
5fd3_B	1e-11	390	472	49	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	493420

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	0.0	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	0.0	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872377.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X1
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	D7MBC7	0.0	D7MBC7_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.7__2853__AT4G14770.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	493420
Entrez Gene	9306357

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]