PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493050
Common NameARALYDRAFT_493050, WRKY28
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 320aa    MW: 35567.9 Da    PI: 7.2314
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493050genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.5e-34172229259
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  493050 172 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCNVKKRVERSFQDPTVVITTYEGQHNHP 229
             8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.6E-1141319IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.2E-35156231IPR003657WRKY domain
SuperFamilySSF1182901.26E-29163231IPR003657WRKY domain
PROSITE profilePS5081132.856166231IPR003657WRKY domain
SMARTSM007741.8E-39171230IPR003657WRKY domain
PfamPF031062.4E-26172229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNISSQN GLYPSTYSFT DCLQSSPGAY  60
ESLLQKSFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC NETETRVSAS NSSSSEADHP  120
GEDSGKSRRK RELVGEEDQS SKKVGKTKKN EVKKQREPRV SFMTKSEVDH LEDGYRWRKY  180
GQKAVKNSPY PRSYYRCTTQ RCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA  240
AAMFSADLLT PRSFAHDMFR TAAYTNGGSA AAAALDYGYG QSGYGSVNAN PSSHQEYHQG  300
GEYELLREIF PSIFFKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29162231877Probable WRKY transcription factor 4
2lex_A2e-29162231877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap493050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423930.0AF442393.1 Arabidopsis thaliana WRKY transcription factor 28 (WRKY28) mRNA, complete cds.
GenBankAY0707610.0AY070761.1 Arabidopsis thaliana AT4g18170/T9A21_10 mRNA, complete cds.
GenBankAY1169430.0AY116943.1 Arabidopsis thaliana AT4g18170/T9A21_10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872179.10.0probable WRKY transcription factor 28
SwissprotQ8VWJ20.0WRK28_ARATH; WRKY transcription factor 28
TrEMBLD7MCV80.0D7MCV8_ARALL; WRKY transcription factor
STRINGfgenesh2_kg.7__2483__AT4G18170.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.10.0WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]