PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GATA

Protein Properties

Length: 312aa MW: 33566.3 Da PI: 6.2812

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
492399	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48	1.8e-15	216	252	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ +g+ 492399 216 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 252 ****999**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.624	80	115	IPR010399	Tify domain
SMART	SM00979	2.8E-14	80	115	IPR010399	Tify domain
Pfam	PF06200	2.0E-12	82	114	IPR010399	Tify domain
Pfam	PF06203	1.7E-14	148	190	IPR010402	CCT domain
PROSITE profile	PS51017	12.034	148	190	IPR010402	CCT domain
SuperFamily	SSF57716	4.7E-13	209	268	No hit	No description
PROSITE profile	PS50114	10.791	210	271	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.4E-17	210	263	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.8E-15	214	257	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.51E-16	215	261	No hit	No description
PROSITE pattern	PS00344	0	216	243	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	5.3E-13	216	252	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MFGRHSQSVI IPNNQIGTAS ASAGEDHVSA SATSGHIPYD DMDEIPHPDS IYGTASDLIP 60 DGSQLVAHRS DGSELLVSRP PEGANQLTIS FRGQVYVFDA VGPDKVDAVL SLLGGSTELA 120 AGPQVMELAQ QNHMPVVEYQ NRCNLPQRAQ SLDRFRKKRN SRCFEKKVRY GVRQEVALRM 180 ARNKGQFTSS KMTDGAYNSG TDQDSVQDDG HPEISCTHCG ISSKCTPMMR RGPSGPRTLC 240 NACGLFWANR GTLRDLSKKT EENQLALIKP SDGVSVADAA NNLNSEAATV EEHTSMVSLA 300 NGDNSHLLGD H*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	492399

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086038	0.0	AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020873632.1	0.0	GATA transcription factor 25
Refseq	XP_020873633.1	0.0	GATA transcription factor 25
Swissprot	Q9LRH6	0.0	GAT25_ARATH; GATA transcription factor 25
TrEMBL	D7M8T9	0.0	D7M8T9_ARALL; Zinc-finger protein expressed in inflorescence meristem
STRING	fgenesh2_kg.7__1832__AT4G24470.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5006	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	0.0	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	492399
Entrez Gene	9305787

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]