PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

492058

Common Name

ARALYDRAFT_492058

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 315aa MW: 35227.3 Da PI: 8.4192

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
492058	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.4	1.7e-50	14	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k................kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeel+v+yL++kv+g +++l +vi ++d+yk++PwdLp k k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkat 492058 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QVIGDIDLYKFDPWDLPsKqtcftflgdyyckfsgKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKAT 115 79*************************9.99**********95489999999998866554444999************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk +++ +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl 492058 116 GTDKIITA-DGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 156 9999.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-62	9	179	IPR003441	NAC domain
PROSITE profile	PS51005	59.009	14	179	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	15	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP 60 SKQTCFTFLG DYYCKFSGKA LFGEKEWYFF SPRDRKYPNG SRPNRVAGSG YWKATGTDKI 120 ITADGRRVGI KKALVFYAGK APKGTKTNWI MHEYRLIEHS RSHESSKLDD WVLCRIYKKT 180 SGSQRQAVTP VQACREEHST NGSSSSSSSQ LDDVLDSFPE IKDQSFNLPR MNSLRTLLNG 240 NFDWASLAGL NPIPELAPTN GLPSYGSYDA FRAAEGEAES GHVNQQQNSG GLTQSYGYSS 300 SGFGVSGQTF EFRQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-101	1	185	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-101	1	185	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-101	1	185	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-101	1	185	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-101	1	185	7	174	NAC domain-containing protein 19
3swm_B	1e-101	1	185	7	174	NAC domain-containing protein 19
3swm_C	1e-101	1	185	7	174	NAC domain-containing protein 19
3swm_D	1e-101	1	185	7	174	NAC domain-containing protein 19
3swp_A	1e-101	1	185	7	174	NAC domain-containing protein 19
3swp_B	1e-101	1	185	7	174	NAC domain-containing protein 19
3swp_C	1e-101	1	185	7	174	NAC domain-containing protein 19
3swp_D	1e-101	1	185	7	174	NAC domain-containing protein 19
4dul_A	1e-101	1	185	4	171	NAC domain-containing protein 19
4dul_B	1e-101	1	185	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	492058

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF083738	0.0	AF083738.1 Arabidopsis thaliana clone sps433 unknown mRNA.
GenBank	AY087772	0.0	AY087772.1 Arabidopsis thaliana clone 38344 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001078452.1	0.0	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Swissprot	Q93VY3	0.0	NAC72_ARATH; NAC domain-containing protein 72
TrEMBL	D7MEG0	0.0	D7MEG0_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.7__1491__AT4G27410.3	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1435	27	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	0.0	NAC family protein

Link Out ? help Back to Top
Phytozome	492058
Entrez Gene	9303577

Publications ? help Back to Top
Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777]