PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491912
Common NameARALYDRAFT_491912
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 350aa    MW: 40254 Da    PI: 6.3041
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491912genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.6e-49101521129
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
             lppGfrFhP+deelv++yL++k++ k+           e          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat sgyWkatg
  491912  10 LPPGFRFHPSDEELVCHYLCNKIRVKSdygdvedD---EvdealkgstDLVEIDLHICEPWELPDVAKLNAKEWYFFSFRDRKYATGYRTNRATISGYWKATG 109
             79**********************99988776551...1445566664699*************87788999******************************* PP

     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
             kd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  491912 110 KDRTVMDPrTRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
             *******967778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-568170IPR003441NAC domain
PROSITE profilePS5100553.31910170IPR003441NAC domain
PfamPF023652.8E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRVKSDYGD VEDDEVDEAL KGSTDLVEID  60
LHICEPWELP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTR  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNIPPKE DWVLCRVFNK GRDSSLQDNS  180
YNTDNQTQRL EVNDAPDLNY NHQLPPLLSS PLHNHQHEKM KIQVCDQWEQ LMKQPSRTTD  240
HPYHHHCHHH TISCGWEQMM IGSLSSSSSH GPDHESLLNL LYVNNNNSVN ISGDHHQNYE  300
KIFLSSPDMT SLDHDKTCMG SSSDGGMVSD LHMECGGLSF ETENLLTFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-441017015168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap491912
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024620.0BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds.
GenBankBT0087410.0BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867445.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ84TE64e-59NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLD7MDB40.0D7MDB4_ARALL; ANAC074
STRINGfgenesh2_kg.7__1345__AT4G28530.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]