PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491837
Common NameARALYDRAFT_491837
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 357aa    MW: 40163.1 Da    PI: 6.589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491837genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08124144526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               C++f++ G Ck Gd+C FaHg
   491837 124 ACPDFRK-GGCKKGDSCEFAHG 144
              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6123146IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6124144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4151181IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.728154178IPR000571Zinc finger, CCCH-type
SMARTSM003560.5154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMIGETRRTY PTVEIPPWPV SEELTTSEFL SPVMNSPDCS MLEALAALQR YLPSNEPDPD  60
SDPDLLGPDS PIDAYSCDHF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCKKGDSCE FAHGVFECWL HPARYRTQPC KDGGNCRRKV CFFAHSPDQL  180
RFLPNRSPDR VDSFDVSSPI RARAFQLSIS PVSGSPPISP RADSESSPMT QSLSRSLGSC  240
SINDVVPSFR NLQFNKVKSF PHNNPLFGFG SPRGSILGPG FQSLPTTPTR PGNLDIWEYG  300
LEEEPVMERV VESGRELREK MREKLHKENC MDRVDPEPDQ KSGDAPDVGW VSDLLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMap491837
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615740.0AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankAY0459700.0AY045970.1 Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds.
GenBankAY0793230.0AY079323.1 Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds.
GenBankAY0856360.0AY085636.1 Arabidopsis thaliana clone 16432 mRNA, complete sequence.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874204.10.0zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLD7MD420.0D7MD42_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.7__1270__AT4G29190.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]