PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491577
Common NameARALYDRAFT_491577
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 496aa    MW: 56355.2 Da    PI: 6.5166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491577genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.7e-1034883596
            EEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3 35 tltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
            ++ l++  s r  +vkl  ++++    l++GW+eF+ +++ k+gD++vFk++g++ f  +v+v
  491577 34 KVLLKSdASDRPRKVKL--DGGR----LSDGWEEFAGDHKFKDGDVLVFKHHGDEVF--HVSV 88
            45555447889999999..8888....9**********************9999999..6665 PP
2B357.42.6e-18151246198
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             f+++ ++ ++l ++rl l+++f+  +gg++ ++ ++ + +e+gr+W++kl  + +sg +++++GW +F+  ngL +g  + Fkl + +++++v+ ++ 
  491577 151 FITACVTRYSLLHDRLDLSRNFTLLFGGNQ-KTCEIDVVNEQGRRWTMKLAKNISSGVFYIRQGWGNFCCVNGLSQGQLCKFKLFQ-NGERPVLWLCP 246
             67788999***************8886664.4459***************99999999*************************988.56667877775 PP
3B371.21.3e-22274373199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             f+ v  +++  ++g+l+lp +f+++++++k++  +++l +++gr+W+ +l++    r++s++++l++GW+e+++ang+k++D++ ++l++ +++++++k+++k
  491577 274 FLIVKYTPSRDTTGQLSLPVSFTRKNNINKAG--EIILLNQDGRKWSSYLQItglgRGGSEWFYLRRGWREMCEANGVKVNDSFKLELMW-EGANPMFKFCSK 373
             55667789999999*************99887..7***************999999999*******************************.9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.5E-101092IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-102689IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-103189IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-75488No hitNo description
PROSITE profilePS508638.9955592IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-15144247IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-16151246IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844151247IPR003340B3 DNA binding domain
SMARTSM010193.0E-23151248IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-16152248IPR015300DNA-binding pseudobarrel domain
CDDcd100174.18E-16163246No hitNo description
Gene3DG3DSA:2.40.330.106.7E-19268373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19271378IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-16273372No hitNo description
PROSITE profilePS5086312.999274373IPR003340B3 DNA binding domain
PfamPF023621.5E-23274373IPR003340B3 DNA binding domain
SMARTSM010194.6E-26274374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEDPPHFSLF QHKFQTGDKP LLTLDADFLM NHTKVLLKSD ASDRPRKVKL DGGRLSDGWE  60
EFAGDHKFKD GDVLVFKHHG DEVFHVSVSG DIQNASSSHV DTEDTYIDDE DLDVDDDDDV  120
DDDEGEDNLE NILEKTNKKQ EADSSSEHPG FITACVTRYS LLHDRLDLSR NFTLLFGGNQ  180
KTCEIDVVNE QGRRWTMKLA KNISSGVFYI RQGWGNFCCV NGLSQGQLCK FKLFQNGERP  240
VLWLCPQESG NGRKEKRTFD EVSKVKEKKT PSPFLIVKYT PSRDTTGQLS LPVSFTRKNN  300
INKAGEIILL NQDGRKWSSY LQITGLGRGG SEWFYLRRGW REMCEANGVK VNDSFKLELM  360
WEGANPMFKF CSKIENHEYK GKGNQRTRKK RACETDPQPR NVKKTPRVGV EGPEHQVDEE  420
RGRTQVSNRT NTISRELQRL LPRSCSGIVD TLNTVRQCRT ELETSEQNLQ ASLLAIEALG  480
ERIWGISKIL SNNLV*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap491577
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3363440.0AF336344.1 Arabidopsis thaliana reproductive meristem protein 1 (REM1) mRNA, complete cds.
GenBankBT0038910.0BT003891.1 Arabidopsis thaliana clone RAFL15-10-H22 (R20619) unknown protein (At4g31610) mRNA, complete cds.
GenBankBT0050020.0BT005002.1 Arabidopsis thaliana clone U20619 unknown protein (At4g31610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872302.10.0LOW QUALITY PROTEIN: B3 domain-containing protein REM1
SwissprotQ84J390.0REM1_ARATH; B3 domain-containing protein REM1
TrEMBLD7MB480.0D7MB48_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__1010__AT4G31610.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]