PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TALE

Protein Properties

Length: 473aa MW: 53778.6 Da PI: 6.7944

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
491396	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.4	2.4e-08	390	428	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA + gLt +qV++WF N R + 491396 390 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 428 5887779******************************88 PP
2	BELL	93.4	2.2e-30	265	335	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r++l++kk++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i 491396 265 QRRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERICKKI 335 6899***************************************.**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.4E-63	195	333	IPR006563	POX domain
Pfam	PF07526	1.6E-27	201	331	IPR006563	POX domain
PROSITE profile	PS50071	10.981	369	432	IPR001356	Homeobox domain
SMART	SM00389	7.1E-5	372	436	IPR001356	Homeobox domain
CDD	cd00086	9.58E-10	372	433	No hit	No description
SuperFamily	SSF46689	5.99E-15	373	441	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-25	375	438	IPR009057	Homeodomain-like
Pfam	PF05920	1.6E-14	389	428	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0009640	Biological Process	photomorphogenesis
GO:0010073	Biological Process	meristem maintenance
GO:0010227	Biological Process	floral organ abscission
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010371	Biological Process	regulation of gibberellin biosynthetic process
GO:0090470	Biological Process	shoot organ boundary specification
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MDNNNTFSSL DNAMTNQNPL LMDFIPSRED STSFSTMLPW NSIRSDPLQM GGFDIFNSML 60 TNKYLSSSSR SIDVQDNRNV ESFEFMAPPP PPPLHPLDHL RPYDDSSNNM WGFEANSVFQ 120 TYSGVVGPSE PIMSTFGEED FPFLISNRRN NELSLSLATD VSDECSEISI CAATRLASEQ 180 ASCSSKDISN NVVTQGFSQL IFGSKYLHSV QEILSHFAAY SLDYSSRGTE PGAASSAFTS 240 RFENITEFLD SDSNNSEAVF GSTFQRRALE AKKTHLLDLL QMVDDRYSHC VDEIHTVVSA 300 FHAATELDPQ LHTRFALQTI SFLYKNLRER ICKKIISMGS VLERGKEKSQ ENSMFHQHCL 360 LQQLKRKNHQ IWRPQRGLPE KSVSVLRTWM FQNFLHPYPK DSEKHLLAIR SGLTRSQVSN 420 WFINARVRLW KPMIEEMYAE MNKRKLNNSH LQPNGATLRM PKSVMMSQAM QK*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MDNNNTFSSL DNAMTNQNPL LMDFIPSRED STSFSTMLPW NSIRSDPLQM GGFDIFNSML  60
TNKYLSSSSR SIDVQDNRNV ESFEFMAPPP PPPLHPLDHL RPYDDSSNNM WGFEANSVFQ  120
TYSGVVGPSE PIMSTFGEED FPFLISNRRN NELSLSLATD VSDECSEISI CAATRLASEQ  180
ASCSSKDISN NVVTQGFSQL IFGSKYLHSV QEILSHFAAY SLDYSSRGTE PGAASSAFTS  240
RFENITEFLD SDSNNSEAVF GSTFQRRALE AKKTHLLDLL QMVDDRYSHC VDEIHTVVSA  300
FHAATELDPQ LHTRFALQTI SFLYKNLRER ICKKIISMGS VLERGKEKSQ ENSMFHQHCL  360
LQQLKRKNHQ IWRPQRGLPE KSVSVLRTWM FQNFLHPYPK DSEKHLLAIR SGLTRSQVSN  420
WFINARVRLW KPMIEEMYAE MNKRKLNNSH LQPNGATLRM PKSVMMSQAM QK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	8e-14	378	436	5	63	Homeobox protein Meis2
3k2a_B	8e-14	378	436	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:17908157}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	491396

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072174	0.0	AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBank	AY096513	0.0	AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBank	X80126	0.0	X80126.1 A.thaliana AtH1 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020875138.1	0.0	homeobox protein ATH1
Swissprot	P48731	0.0	ATH1_ARATH; Homeobox protein ATH1
TrEMBL	D7M9B9	0.0	D7M9B9_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.7__829__AT4G32980.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8228	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	0.0	homeobox gene 1

Link Out ? help Back to Top
Phytozome	491396
Entrez Gene	9303287

Publications ? help Back to Top
Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]