PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 352aa MW: 38542.2 Da PI: 4.6635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
491291	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	281	321	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq 491291 281 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 321 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-14	273	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-12	276	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-11	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.81E-12	280	325	No hit	No description
Pfam	PF00010	1.4E-7	281	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0016049	Biological Process	cell growth
GO:0048766	Biological Process	root hair initiation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEAMGEWSTN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGATGGDHHQ GLYWNLGSHH 60 NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPAAEENQ NGTMDFGMED VTINTNSYLV 120 GEETSECDVE KYTSGKTLMP LETVVENQDD EESLLQSEIS VTTTKSLTGS KKRSRATSND 180 KNKRARVNKR SQKNIEMSGD NNGGEEEEGE KLKKRKNGAM MSRQNSSTTF CTEEESNCAD 240 QDGGGEDSSS KEDDASKALN LNGKTRASRG AATDPQSLYA RKRRERINER LRILQNLVPN 300 GTKVDISTML EEAVHYVKFL QLQIKLLSSD DLWMYAPIAF NGMDIGLSSP R*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEAMGEWSTN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGATGGDHHQ GLYWNLGSHH  60
NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPAAEENQ NGTMDFGMED VTINTNSYLV  120
GEETSECDVE KYTSGKTLMP LETVVENQDD EESLLQSEIS VTTTKSLTGS KKRSRATSND  180
KNKRARVNKR SQKNIEMSGD NNGGEEEEGE KLKKRKNGAM MSRQNSSTTF CTEEESNCAD  240
QDGGGEDSSS KEDDASKALN LNGKTRASRG AATDPQSLYA RKRRERINER LRILQNLVPN  300
GTKVDISTML EEAVHYVKFL QLQIKLLSSD DLWMYAPIAF NGMDIGLSSP R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	491291

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488616	0.0	AF488616.1 Arabidopsis thaliana clone bHLH085 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK228110	0.0	AK228110.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-58-P18.
GenBank	BT003137	0.0	BT003137.1 Arabidopsis thaliana At4g33880 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020875027.1	0.0	transcription factor bHLH85
Swissprot	Q84WK0	0.0	BH085_ARATH; Transcription factor bHLH85
TrEMBL	D7MGE4	0.0	D7MGE4_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.7__724__AT4G33880.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2834	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	0.0	ROOT HAIR DEFECTIVE 6-LIKE 2

Link Out ? help Back to Top
Phytozome	491291
Entrez Gene	9305261

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]