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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 491088 | ||||||||
Common Name | ARALYDRAFT_491088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 508aa MW: 57086.8 Da PI: 4.9941 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174 | 4.3e-54 | 9 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi+++d++k+ePwdLp+ +k+++ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd++++s k++l+g 491088 9 LPLGFRFRPTDEELVNHYLRLKINGRHSDV-RVIPDIDVCKWEPWDLPAlsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKS-KKTLIG 109 699************************999.99***************4447888889**************************************.999*** PP NAM 102 lkktLvfykgrapkgektdWvmheyr 127 +kktLvfy+grapkge+t+W+mheyr 491088 110 MKKTLVFYRGRAPKGERTNWIMHEYR 135 *************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-63 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.036 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MGAVSMESLP LGFRFRPTDE ELVNHYLRLK INGRHSDVRV IPDIDVCKWE PWDLPALSVI 60 KTDDPEWFFF CPRDRKYPNG HRSNRATDSG YWKATGKDRS IKSKKTLIGM KKTLVFYRGR 120 APKGERTNWI MHEYRPTLKD LDGTSPGQSP YVLCRLFHKL DDRVNGVKSD EAAPTTCNKY 180 SPDDTSSDLV QETPSSDAAV EKPSDYSGGC GYAQSNAADG AMIEEAPEEN LWLPCDLEDQ 240 RAPLPRMDYT YAGDFSYDEI GFQFQDGTSE PDVSLTELLE EVFNNPDDFS CEESVSRENT 300 VAPNGIFSSS KILQSPAPED VFFNDFMAYT DTDAEMAQLQ YDSNGGASGW PRDYSDLVHP 360 EQMLNHNTEN NLTEGRGIKI RARQPQNRQS TGLINQGIAP RRIRLQLQSS SEVNQQEEVN 420 EGHTVIPEVR ETKEVAAEKS DALVKPQIKL RARGTIGQVK AERIADNEVQ VQSRKRRRGK 480 QWKVVATVMV AVMVVVGVSI WMTLVSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 4 | 159 | 15 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 473 | 477 | RKRRR |
2 | 473 | 480 | RKRRRGKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 491088 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY056443 | 0.0 | AY056443.1 Arabidopsis thaliana AT4g35580/F8D20_90 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872812.1 | 0.0 | protein NTM1-like 9 isoform X1 | ||||
Swissprot | F4JN35 | 0.0 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | D7MCZ0 | 0.0 | D7MCZ0_ARALL; Predicted protein | ||||
STRING | fgenesh2_kg.7__521__AT4G35580.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5594 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 0.0 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | 491088 |
Entrez Gene | 9303137 |
Publications ? help Back to Top | |||
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