PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GATA

Protein Properties

Length: 244aa MW: 27365.7 Da PI: 6.5082

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
491007	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.9	1.4e-18	171	205	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ +Tp+WR gp g ktLCnaCG+++++ +l 491007 171 CSHCGVQETPQWRMGPLGAKTLCNACGVRFKSGRL 205 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	2.7E-90	1	241	IPR016679	Transcription factor, GATA, plant
SuperFamily	SSF57716	8.08E-14	164	227	No hit	No description
PROSITE profile	PS50114	11.583	165	201	IPR000679	Zinc finger, GATA-type
SMART	SM00401	7.4E-14	165	219	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.0E-14	169	203	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	7.41E-14	171	212	No hit	No description
Pfam	PF00320	1.7E-16	171	205	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	171	196	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MECVELEAFL GDFSVDDLLD LSNADTAFVR EESSSSQREE GEQEREKAKS FSDHSTRLSP 60 LEELLSFHGD VPVGDLEDLE WLSNFVEDSF SESHLSSDFP VTPVASVEVQ RQCVPVKPRS 120 KRRRINGRIW SLESPSRLLS TAAAKEKKRW RQKAEASCGG EVQQQQPRRC CSHCGVQETP 180 QWRMGPLGAK TLCNACGVRF KSGRLLPEYR PACSPTFTTE IHSNSHRKVL ELRLMKTADP 240 GRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	124	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	491007

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072434	0.0	AY072434.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds.
GenBank	AY114720	0.0	AY114720.1 Arabidopsis thaliana putative protein (At4g36240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020875620.1	1e-179	GATA transcription factor 7
Swissprot	O65515	1e-148	GATA7_ARATH; GATA transcription factor 7
TrEMBL	D7MBN2	1e-177	D7MBN2_ARALL; GATA transcription factor
STRING	fgenesh2_kg.7__440__AT4G36240.1	1e-178	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14654	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36240.1	1e-139	GATA transcription factor 7

Link Out ? help Back to Top
Phytozome	491007
Entrez Gene	9305111

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]