PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GATA

Protein Properties

Length: 214aa MW: 23605.6 Da PI: 7.0902

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
490976	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	63.5	2.5e-20	77	111	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ 490976 77 CTNCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 111 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.3E-18	71	123	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	14.035	71	107	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.28E-13	74	111	No hit	No description
Gene3D	G3DSA:3.30.50.10	5.4E-17	75	111	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.10E-14	76	108	No hit	No description
PROSITE pattern	PS00344	0	77	102	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	6.5E-18	77	111	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGFSMFFSAE NDVVHHSSPY ASVDCTLSLG TPSTRLCNDD DERRFSSHTS DALGWDFLNG 60 SKKGGGGGGH NLLARRCTNC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRASTAGNST 120 SGGGSTAARV PTFDHQAGAN YYYNNNNQYA SSSPWVHHHQ HNTQRIPYYS PANNEYSYVD 180 DVRDVDHDVT TDPFLSWRLN LADRTSLVHD FTM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269\|PubMed:23335616, ECO:0000269\|PubMed:25077795}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00472	DAP	Transfer from AT4G36620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	490976

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by HAN. {ECO:0000269\|PubMed:23335616}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029506	0.0	BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002867005.1	1e-159	GATA transcription factor 19
Swissprot	Q6QPM2	1e-119	GAT19_ARATH; GATA transcription factor 19
TrEMBL	D7MBG0	1e-158	D7MBG0_ARALL; Zinc finger family protein
STRING	fgenesh2_kg.7__409__AT4G36620.1	1e-159	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4057	25	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	1e-107	GATA transcription factor 19

Link Out ? help Back to Top
Phytozome	490976
Entrez Gene	9303077

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795]