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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 490976 | ||||||||
Common Name | ARALYDRAFT_490976 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 214aa MW: 23605.6 Da PI: 7.0902 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.5e-20 | 77 | 111 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ 490976 77 CTNCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 111 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-18 | 71 | 123 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.035 | 71 | 107 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.28E-13 | 74 | 111 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.4E-17 | 75 | 111 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.10E-14 | 76 | 108 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 77 | 102 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.5E-18 | 77 | 111 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGFSMFFSAE NDVVHHSSPY ASVDCTLSLG TPSTRLCNDD DERRFSSHTS DALGWDFLNG 60 SKKGGGGGGH NLLARRCTNC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRASTAGNST 120 SGGGSTAARV PTFDHQAGAN YYYNNNNQYA SSSPWVHHHQ HNTQRIPYYS PANNEYSYVD 180 DVRDVDHDVT TDPFLSWRLN LADRTSLVHD FTM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 490976 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029506 | 0.0 | BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002867005.1 | 1e-159 | GATA transcription factor 19 | ||||
Swissprot | Q6QPM2 | 1e-119 | GAT19_ARATH; GATA transcription factor 19 | ||||
TrEMBL | D7MBG0 | 1e-158 | D7MBG0_ARALL; Zinc finger family protein | ||||
STRING | fgenesh2_kg.7__409__AT4G36620.1 | 1e-159 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4057 | 25 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 1e-107 | GATA transcription factor 19 |
Link Out ? help Back to Top | |
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Phytozome | 490976 |
Entrez Gene | 9303077 |
Publications ? help Back to Top | |||
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