PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490864
Common NameARALYDRAFT_490864
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 241aa    MW: 26578.3 Da    PI: 8.4307
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490864genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260958.2e-302103197
  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
             +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++ +pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l+
  490864   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATIFVAKFFGRAGLMSFISGVPEIQRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQAAVETVLR 103
             6*********************9999777889****************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5141107IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATIFVA KFFGRAGLMS FISGVPEIQR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLM  120
LSSDESSEIW HQDVSRNKNH HCRFTTSRSK TEMKDSLVNR KRFKSDSDLD LQVNDGLTLT  180
AQAVPVPFLP PSTFCKAVNG DRPGSPSEES VTTSCWENGM RGDNKQRRNK GEKKLLNLFV  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMap490864
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738740.0AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721440.0AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229760.0AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875549.11e-179LOB domain-containing protein 39 isoform X1
SwissprotQ9SZE81e-168LBD39_ARATH; LOB domain-containing protein 39
TrEMBLD7MAL21e-178D7MAL2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__297__AT4G37540.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-156LOB domain-containing protein 39