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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
490820 |
Common Name | ARALYDRAFT_490820 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
MIKC_MADS |
Protein Properties |
Length: 228aa MW: 26457 Da PI: 7.8283 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
490820 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 83.3 | 1.5e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri++++ rqvtfskRr+g++KKA+EL +LCdaev +iifsstgkly+++s
490820 10 RIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFAS 59
8***********************************************86 PP
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2 | K-box | 73.4 | 6.7e-25 | 81 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreq.RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ +++ + +q+e+a L++e++ Lq+++ R+++Ge+L+ Ls++eL++Le+qLe sl+ iR kK+++l+++i+el +k + +++en +L++k++
490820 81 NPASEVKFWQREAAVLRQELHALQENHrRQMMGEQLNGLSVNELNSLENQLEISLRGIRMKKEQMLTQEIQELSQKRNLIRQENLDLSRKVQ 172
577889******************776369************************************************************97 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.30E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.18E-31 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-22 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.468 | 86 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008134 | Molecular Function | transcription factor binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS 60 SMESVIDRYN KSKIEQQQLM NPASEVKFWQ REAAVLRQEL HALQENHRRQ MMGEQLNGLS 120 VNELNSLENQ LEISLRGIRM KKEQMLTQEI QELSQKRNLI RQENLDLSRK VQRIHQENVE 180 LYKKAYTENT NGFIHHELAV ADDESHTQIR LQLSQPEHSD YETPHQD*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF336979 | 0.0 | AF336979.1 Arabidopsis thaliana MADS-box protein AGL21 mRNA, complete cds. |
GenBank | BT024846 | 0.0 | BT024846.1 Arabidopsis thaliana At4g37940 gene, complete cds. |