PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490404
Common NameARALYDRAFT_490404, WRKY47
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 490aa    MW: 53746.1 Da    PI: 6.4255
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490404genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31239298159
             ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
             ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  490404 239 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 298
             58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-33224300IPR003657WRKY domain
SuperFamilySSF1182907.85E-28232300IPR003657WRKY domain
PROSITE profilePS5081128.908234300IPR003657WRKY domain
SMARTSM007741.6E-37239299IPR003657WRKY domain
PfamPF031061.5E-26240298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEEHIQDRRE IAFLHSGEFL QGDSDSKDHQ TNESPDEEHH QEQSIKEVDF FAAKSHRSDL  60
GHVRTTSIIG PSGFNDGLGL VNSCHGTSSD DGDDTTKTQI SRLKLELERL NEENHKLKHL  120
LDEVSESYND LQRRVLLARQ TQVEGLHKQH EVLVPQAGSS QALEDRRPLD MNNETPATTL  180
KRRSPDDVDD HDMHRGSPKT PRLDQTKSTN HEEQQNPHDQ LPFRKARVSV RARSDATTVN  240
DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC AEDTTILTTT YEGNHNHPLP  300
PSATAMAATT SAAAAMLLSG STTSNLHQTL SNPSATSSSS FYHNFPYTST IATLSASAPF  360
PTITLDLTNP PRPLQPPQQF LSQYGPAAFI PNANQIRSMN NNNQQLLIPN LFGPQAPPRE  420
MVDSVRAAIA MDPNFTAALA AAISNIIGGG NNDNNNNDIN NNKVDAKSGG SSNGDSPQLP  480
QSCTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22226301175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap490404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4801650.0AF480165.1 Arabidopsis thaliana WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
GenBankAK2295220.0AK229522.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL17-27-A10.
GenBankBT0087040.0BT008704.1 Arabidopsis thaliana clone RAFL17-27-A10 (R50576) putative WRKY family transcription factor (At4g01720) mRNA, complete cds.
GenBankBT0290240.0BT029024.1 Arabidopsis thaliana At4g01720 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879345.10.0probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLD7M4960.0D7M496_ARALL; WRKY DNA-binding protein 47
STRINGfgenesh2_kg.6__3538__AT4G01720.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein