PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489672
Common NameARALYDRAFT_489672
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 415aa    MW: 46479.7 Da    PI: 5.7631
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489672genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.92.3e-33232286155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++++gLt++hvkSHLQkYR+
   489672 232 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNIPGLTIYHVKSHLQKYRT 286
              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.943229289IPR017930Myb domain
SuperFamilySSF466891.09E-17230286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-30230288IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23232286IPR006447Myb domain, plants
PfamPF002498.0E-11234285IPR001005SANT/Myb domain
PfamPF143796.0E-22320366IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MTLANDYGYS TAMSSSFSAL HTTVEERYRK LPNSFWVSSG QELMNNPVPC QSVSGGNSGG  60
YLFPSPSGFC NVSAVSPHGR NLQNQPPVSI VPRERLAMQD CPLEAQPPLL INHHHQEFTD  120
PLPEFFDFSD HVPVQNVQAE SSGVRVDSSV ELHKKSEWQE WADQLISVDD GSEPNWSELL  180
GDSSSHNPNS EIPTPFLDVR RQEIKANQQQ QVVSSEDQLS GKNSSSSVAT SKQRMRWTPE  240
LHEAFVEAVN QLGGSERATP KAVLKLLNIP GLTIYHVKSH LQKYRTARYK PDTSEVTGEP  300
QEKNMTSIED IKSLDMKTSV EITQALRLQM EVQKRLHEQL EIQRSLQLQI EKQGRYLQMM  360
FEKQQKIQEN KSSSPEASPK QCNGTSAEVE VDLETRTGAH NEPASASRKR VRED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-28232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-28232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-28232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-28232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-28232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-28232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-28232290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-28232290260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap489672
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0023440.0BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877765.10.0protein PHR1-LIKE 1 isoform X1
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLD7M7060.0D7M706_ARALL; Myb family transcription factor
STRINGfgenesh2_kg.6__2806__AT5G29000.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]