PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

489657

Common Name

ARALYDRAFT_489657

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WRKY

Protein Properties

Length: 331aa MW: 36548.9 Da PI: 10.2213

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
489657	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.8	7.2e-31	263	320	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ 489657 263 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHS 320 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.0E-14	220	259	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.8E-33	249	320	IPR003657	WRKY domain
PROSITE profile	PS50811	29.31	256	322	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	259	320	IPR003657	WRKY domain
SMART	SM00774	5.5E-37	261	321	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	263	319	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNDSK SIMVETREAV SKFKRVSSLL ARGLGQRKIK 60 KLNNYKFSSS LLPQHMFLES PICSNNAISG SIPVLAPKPL QIVPASHPPL MLFNQKMCVD 120 KSFLELKPPS FRAVDPKPYQ VIHNHQQGVY SRSKSGLNLK FDGSGGVSCY SPSMSNGSRS 180 FVSSLSMDGS VTDYDMNSFH LIGLPQGSDH ISQHSRRTSC SGSLKCGSRS KCHCSKKRKS 240 VLRVKRTIRV PAISNRIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE 300 RCVDETSMLI VTYEGEHNHS RLLSSQSAHT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-21	249	320	2	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	489657

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF442398	0.0	AF442398.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020876190.1	0.0	probable WRKY transcription factor 74
Swissprot	Q93WU6	0.0	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	D7M6W2	0.0	D7M6W2_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.6__2791__AT5G28650.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	0.0	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	489657
Entrez Gene	9308388

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]