PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489405
Common NameARALYDRAFT_489405
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 281aa    MW: 32154.4 Da    PI: 7.8489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489405genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.7e-12341131599
             -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             + ++p +f+++  g    +  +++  ++ +sW++ l  ++ +++ +++++ W+eFv++n+L  +D + F++d  ++ +l v++f++
  489405  34 MRIIPEEFVRRTPGA--FEHRVVFSVRWENSWQLWL--EREKNElFMIEEDWNEFVDDNHLGPNDNLFFRHD--ETMNLEVQIFKN 113
             4589*****999655..3446***************..8888888*************************65..566669999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-1614114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-1616115IPR015300DNA-binding pseudobarrel domain
CDDcd100175.12E-1317112No hitNo description
SMARTSM010192.9E-1819114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.20920114IPR003340B3 DNA binding domain
PfamPF023623.9E-1033113IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-11178266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-9179269IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-10185280IPR003340B3 DNA binding domain
PROSITE profilePS502877.415218280IPR001190SRCR domain
PROSITE profilePS508636.061241276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006898Biological Processreceptor-mediated endocytosis
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005044Molecular Functionscavenger receptor activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLPRGAIDKI QGNVSKPCFW KSLSPGQNWK SKPMRIIPEE FVRRTPGAFE HRVVFSVRWE  60
NSWQLWLERE KNELFMIEED WNEFVDDNHL GPNDNLFFRH DETMNLEVQI FKNNGDEIID  120
VPLEVEPETE PFHPTPKKSH RETTAASASV SGGSANGGTN CRGRQRSNDV KNPERYLLNP  180
ENPYFVQAVT KRNDVLYVSR PVVQTYNLKF GPVKSTITYL LPGGKKEEGE TKIYNGQPCF  240
SGWSVLCRRH NLKIGDSVVC ELERCGGLVT AVRVHFVNKY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAPTransfer from AT5G25475Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap489405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1759280.0AK175928.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-59-D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876196.10.0B3 domain-containing protein At5g25475
RefseqXP_020876197.10.0B3 domain-containing protein At5g25475
RefseqXP_020876198.10.0B3 domain-containing protein At5g25475
RefseqXP_020876199.10.0B3 domain-containing protein At5g25475
SwissprotQ680D90.0Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLD7M3Z60.0D7M3Z6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2539__AT5G25475.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-177B3 family protein