PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489374
Common NameARALYDRAFT_489374
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 430aa    MW: 47312.6 Da    PI: 6.3655
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489374genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073663992154
               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               k +yp++e++++L +++gL+ +q+ +WF N+R +
    489374 366 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 399
               469*****************************87 PP
2ELK28.82.8e-10320341122
     ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
             ELKh+L+++Y+++++++++E++
  489374 320 ELKHELKQGYKEKIVDIREEIL 341
             9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19155199IPR005540KNOX1
PfamPF037901.1E-17158198IPR005540KNOX1
SMARTSM012562.5E-29211266IPR005541KNOX2
PfamPF037912.8E-21215265IPR005541KNOX2
PfamPF037891.0E-6320341IPR005539ELK domain
PROSITE profilePS512139.969320340IPR005539ELK domain
SMARTSM011886.1E-4320341IPR005539ELK domain
PROSITE profilePS5007111.726340403IPR001356Homeobox domain
SuperFamilySSF466895.13E-16342406IPR009057Homeodomain-like
SMARTSM003892.4E-11342407IPR001356Homeobox domain
CDDcd000861.17E-11343404No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25347404IPR009057Homeodomain-like
PfamPF059201.2E-17360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSVNNN  60
FLNLHTATAN TTTASSSDSP SSAAAAANQW LSRSSSFLQR NNNATASTVV GDGIDDVTGG  120
AETMIQGDMK SGGGENKNDG GGAAAADGVV SWQNARHKAE ILSHPLYEQL LSAHVACLRI  180
ATPVDQLPRI DAQLAQSQHV VAKYSALGAA AQGLVGDDKE LDQFMTHYVL LLCSFKEQLQ  240
QHVRVHAMEA VMACWEIEQS LQSLTGVSPG EGMGATMSDD EDEQVESDAN LFDGSLDVLG  300
FGPLVPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP GDTTSVLKAW  360
WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTV LKNKRKSNAG  420
DNSGRERFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12343407872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap489374
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX923920.0X92392.1 A.thaliana mRNA for KNAT3 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872145.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLD7M3V60.0D7M3V6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2508__AT5G25220.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]