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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 489268 | ||||||||
Common Name | ARALYDRAFT_489268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 34527.9 Da PI: 6.7605 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.1 | 3.1e-27 | 113 | 174 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+YYrCt++ gC+++k+v+rs+e++ ++ei Y+g H ++ 489268 113 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSDENQMLFEISYRGIHSCS 174 59***************************98889*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-25 | 111 | 175 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-24 | 112 | 175 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-39 | 113 | 175 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.218 | 113 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-25 | 114 | 173 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEKNHSSGEW EKMKKEINEL MTEGRDYAHQ FGSASSQETR EHLAKKILES YHKSLTIMNY 60 SGELDQVSHG GGSPKSDDSD QEPLHVIKSS KKSMPRWTSK VRIAPGAGID RTLDDGFSWR 120 KYGQKDILGA KFPRGYYRCT YRKSQGCEAT KQVQRSDENQ MLFEISYRGI HSCSQAGHVR 180 SNIPVQHLEP NQTQEHENLD MVKESLDNYN HQAHLHDNFH YPLCSTPNLE NNNAYMLQLR 240 DHNTEFFGST SFSSDLRTNI NYNFPASGSA SHSTSNSPST VPLESPFESY DPNHPYGGFG 300 GFYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 113 | 171 | 14 | 74 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 113 | 171 | 14 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00525 | DAP | Transfer from AT5G24110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 489268 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF404858 | 0.0 | AF404858.1 Arabidopsis thaliana WRKY transcription factor 30 (WRKY30) mRNA, complete cds. | |||
GenBank | AK117885 | 0.0 | AK117885.1 Arabidopsis thaliana At5g24110 mRNA for unknown protein, complete cds, clone: RAFL19-06-C08. | |||
GenBank | BT005295 | 0.0 | BT005295.1 Arabidopsis thaliana At5g24110 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879306.1 | 0.0 | probable WRKY transcription factor 30 | ||||
Swissprot | Q9FL62 | 0.0 | WRK30_ARATH; Probable WRKY transcription factor 30 | ||||
TrEMBL | D7M2H2 | 0.0 | D7M2H2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__2402__AT5G24110.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12595 | 19 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 0.0 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
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Phytozome | 489268 |
Entrez Gene | 9308162 |
Publications ? help Back to Top | |||
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