PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488590
Common NameARALYDRAFT_488590
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 476aa    MW: 54474.7 Da    PI: 5.2391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488590genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-5361331128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
             lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+eP +L  k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v   +++++g
  488590   6 LPPGFRFHPTDEELITYYLKRKINGQEIEL-EIIPEVDLYKCEPCKLAgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW-RDRAIG 106
             79****************************.99**************85335667999*************************************9.8899** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
             +kktLv+y+grap+g +t Wvmheyrl
  488590 107 TKKTLVYYRGRAPHGIRTGWVMHEYRL 133
             *************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-614157IPR003441NAC domain
PROSITE profilePS5100558.3966157IPR003441NAC domain
PfamPF023653.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090602Biological Processsieve element enucleation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING QEIELEIIPE VDLYKCEPCK LAGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECVP SAFGMQDAYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTSS  180
NLSGNSSFDV CSDLEISSNA PYNSAADIQS RFGNANAITD HDDWSQYLSQ NMPTSFADYG  240
SPYGPSLTQS KVNTEMECEM LQHQMSLPPL RVENSPAQTR DFSKRMNQNS GQSGFDDFTF  300
AASNSNQFYN NNVDDHLIHI GDLDVGNSFL EEEEILPSFE SNDQDLEFYG GSRTNTINNI  360
EIDDFFSFEN QAQDNDNSNV TPNSAGLEMI GEEIIVNHKM LISTRQTTEI LYYQVVPSQI  420
LKIHINPVHG NEERTMLMEE GSDDSWFQKA ENVAKLKLKQ ISLVAKRYYK CLTIIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51115712165NO APICAL MERISTEM PROTEIN
1ut4_B2e-51115712165NO APICAL MERISTEM PROTEIN
1ut7_A2e-51115712165NO APICAL MERISTEM PROTEIN
1ut7_B2e-51115712165NO APICAL MERISTEM PROTEIN
4dul_A2e-51115712165NAC domain-containing protein 19
4dul_B2e-51115712165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap488590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052381e-164AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBankCP0026881e-164CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876528.10.0NAC domain-containing protein 86
SwissprotQ9FFI50.0NAC86_ARATH; NAC domain-containing protein 86
TrEMBLD7LWY70.0D7LWY7_ARALL; ANAC086 (Fragment)
STRINGfgenesh2_kg.6__1724__AT5G17260.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.10.0NAC domain containing protein 86
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]