PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

488428

Common Name

ARALYDRAFT_488428

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 185aa MW: 21433.5 Da PI: 5.9364

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
488428	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.5	8e-15	73	129	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++L ++l++ +++ +++ + 488428 73 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVSDNNDRVIQ 129 689********************************************9999877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-13	69	133	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	71	134	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-11	72	126	No hit	No description
Pfam	PF00170	1.4E-12	73	127	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.29E-13	73	123	No hit	No description
CDD	cd14702	4.00E-18	74	121	No hit	No description
PROSITE pattern	PS00036	0	76	91	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MQPNYDSSSL NNMQQQDYFH LNYYNNLNPS TNNNNLNLLQ YPQIQELNLQ SPVSNNSTTS 60 DDATEGIFVI NERKQRRMVS NRESARRSRM RKQRHLDELL SQVAWLRSEN HQLLDKLNQV 120 SDNNDRVIQE NLSLKEENLE LRQVITSVKK LGGGIHDKYS SSSMDELDQD FSSITDDPRT 180 HHPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	92	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00512	DAP	Transfer from AT5G15830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	488428

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117828	0.0	AK117828.1 Arabidopsis thaliana At5g15830 mRNA for putative bZIP transcription factor AtbZip3, complete cds, clone: RAFL18-02-O03.
GenBank	AL391144	0.0	AL391144.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F8 (ESSA project).
GenBank	BT003683	0.0	BT003683.1 Arabidopsis thaliana At5g15830 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020876606.1	1e-131	basic leucine zipper 43
Swissprot	Q9FMC2	1e-32	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	D7M7G7	1e-130	D7M7G7_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.6__1562__AT5G15830.1	1e-131	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	2e-99	basic leucine-zipper 3

Link Out ? help Back to Top
Phytozome	488428
Entrez Gene	9307756

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]