PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB

Protein Properties

Length: 328aa MW: 37018.5 Da PI: 7.1318

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
488379	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g++R++k+c++rw +yl 488379 14 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.9	3.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l 488379 67 RGKFNLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 899*****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-25	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.705	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.14E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.91E-12	16	61	No hit	No description
PROSITE profile	PS51294	25.25	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-25	64	117	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	7.18E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000902	Biological Process	cell morphogenesis
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGRSPCCDKL GLKKGPWTPE EDQKLLAYIE EHGHGSWRSL PEKAGLHRCG KSCRLRWTNY 60 LRPDIKRGKF NLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLVKMG 120 IDPVTHKPKN ETPLSSLGLS KNAAILSHTA QWESARLEAE ARLARESKLL HLQHYQTKTS 180 SHHHHHGFTH KSLLPNWTTK PNEDQQQLES PTSTVSFSEM KESIPAKIEF VGSSTGLSLM 240 KEPDQNDWIN STMHEFETTQ MGEGIEEGFT GLLLGGDSID RSFSGEKNET AGESSGGDCN 300 YYEDNKNYLD SIFNFVDPSP SVSPPMF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-26	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	488379

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF370613	0.0	AF370613.1 Arabidopsis thaliana myb-related protein-like (F8M21_200) mRNA, complete cds.
GenBank	AK228474	0.0	AK228474.1 Arabidopsis thaliana mRNA for myb-related protein - like, complete cds, clone: RAFL15-07-O19.
GenBank	AY519624	0.0	AY519624.1 Arabidopsis thaliana MYB transcription factor (At5g15310) mRNA, complete cds.
GenBank	BT028929	0.0	BT028929.1 Arabidopsis thaliana At5g15310 mRNA, complete cds.
GenBank	X99809	0.0	X99809.1 A.thaliana mRNA for Mixta protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020876600.1	0.0	transcription factor MYB102 isoform X2
Swissprot	Q9LXF1	0.0	MYB16_ARATH; Transcription factor MYB16
TrEMBL	D7M7B6	0.0	D7M7B6_ARALL; AtMIXTA/AtMYB16
STRING	fgenesh2_kg.6__1513__AT5G15310.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	0.0	myb domain protein 16

Link Out ? help Back to Top
Phytozome	488379
Entrez Gene	9309788

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]