PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 48805
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 458aa    MW: 51214.4 Da    PI: 8.3953
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
48805genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.5e-13421447127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              +++e+C f+++tG Ck+G++CkF H++
    48805 421 PGREPCEFYMKTGRCKFGATCKFDHPQ 447
              689**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5001132.37215252IPR000719Protein kinase domain
SMARTSM002203.3E-3815252IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.206.7E-91997No hitNo description
SuperFamilySSF561128.77E-5419255IPR011009Protein kinase-like domain
PfamPF000691.0E-3620250IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.101.7E-4398282No hitNo description
PROSITE patternPS001080108120IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139236.255255387IPR010513KEN domain
CDDcd104221.49E-62256385No hitNo description
PfamPF064799.1E-35258385IPR010513KEN domain
SMARTSM005807.3E-14318372IPR018997PUB domain
PROSITE profilePS5010315.835420448IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6420447IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-11421447IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6422447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5424446IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0008380Biological ProcessRNA splicing
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0046777Biological Processprotein autophosphorylation
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEEKTREETR VGRLRIKPSV LGYGSCGTIV FEGELDGRRV AVKRLLAQFH ELARKELQAL  60
IASDEHPNIL RCFALEEDSN FVYMALELCA SILHDVVAGL AALHGQGIIH RDLKPQNVLI  120
TSSGRGKIAD MGLAKRVNVS EGTSFYTHTN GNLNVNDAAG TSGWQAPERL TQGRQSRSVD  180
VFSLGCLMYY CLTGGAHPFG ERLQRDANVV ANSYDVSKLK YFPEAEALVK ACIDADPSKR  240
PSATEILAHP MWWDAEKKLQ FLIDASDRVE LEDRMSDRSL LRAFETRAKS SIACDDWTKK  300
LDAALLENLG RYREYDGTSL RDLLRVIRNK ANHYRELPPK LQRTLGSYPD GLWRYVSIRF  360
PALLLGVRDF FAPSAAREPT LAKYFLSIDA ASKASFAPPL ARAESIPDKP LIAPQVFPSR  420
PGREPCEFYM KTGRCKFGAT CKFDHPQGVH WDVHNER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G1e-101838728448Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005820.0CP000582.1 Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416089.10.0predicted protein
TrEMBLA4RTE70.0A4RTE7_OSTLU; Uncharacterized protein
STRINGABO943810.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.24e-17WRKY family protein