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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 487996 | ||||||||
Common Name | ARALYDRAFT_487996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26171 Da PI: 5.1512 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.9e-19 | 50 | 100 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g 487996 50 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 100 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-13 | 50 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-36 | 51 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-32 | 51 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 51 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.459 | 51 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.79E-33 | 52 | 110 | No hit | No description |
PRINTS | PR00367 | 2.4E-10 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAEEYYNLRS ERVTQHLVPN SESDSVSQKS KAEQSENKKT KRVIDSGKHP VYRGVRMRNW 60 GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSIKG TSAILNFPEL ADSFPRPVSL 120 SPRDIQTAAL KAAHMEPTTS FSSSTSSSSS SSTSSLESLV LVMDLSRTES EELGEIVELP 180 SLGASYDFDS ANLGNEFVFS DSVDYCLYPP PWGQSSEDNY GYGISPYFGH GLSWDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 49 | 108 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 487996 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163814 | 0.0 | AL163814.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project). | |||
GenBank | AL163815 | 0.0 | AL163815.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project). | |||
GenBank | AY560851 | 0.0 | AY560851.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11590) mRNA, complete cds. | |||
GenBank | AY940160 | 0.0 | AY940160.1 Arabidopsis thaliana DREB3 (DREB3) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879573.1 | 1e-172 | dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 1e-142 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | D7M4A2 | 1e-172 | D7M4A2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__1130__AT5G11590.1 | 1e-173 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-142 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 487996 |
Entrez Gene | 9307552 |
Publications ? help Back to Top | |||
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