PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 487648 | ||||||||
Common Name | ARALYDRAFT_487648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 93aa MW: 11183.7 Da PI: 9.8024 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.4 | 4.1e-10 | 14 | 71 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae...NkaLkkeleelkkevak 58 kr rr++ NRe+ArrsR R ++ e L+ vk+L a N++ +e+++lk++v++ 487648 14 EKRLRRLATNRESARRSRMRERMMKEVLQMQVKQLMALleyNHQILQENSQLKETVSS 71 59*******************************98764444*************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.2E-10 | 11 | 72 | No hit | No description |
SMART | SM00338 | 1.8E-5 | 11 | 78 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.9E-9 | 11 | 66 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.38E-6 | 15 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
HYRHQQPFVV TDQEKRLRRL ATNRESARRS RMRERMMKEV LQMQVKQLMA LLEYNHQILQ 60 ENSQLKETVS SFYNQYTISY GNHEDILGNI ND* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 487648 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL357612 | 9e-53 | AL357612.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project). | |||
GenBank | CP002688 | 9e-53 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020876616.1 | 5e-49 | LOW QUALITY PROTEIN: basic leucine zipper 8 | ||||
TrEMBL | D7M190 | 5e-61 | D7M190_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.6__782__AT5G08141.1 | 9e-62 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17031 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08141.1 | 5e-39 | basic leucine-zipper 75 |
Link Out ? help Back to Top | |
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Phytozome | 487648 |
Entrez Gene | 9307380 |