PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 487493 | ||||||||
Common Name | ARALYDRAFT_487493 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 366aa MW: 41411.5 Da PI: 6.9394 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.4 | 2.4e-31 | 184 | 238 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v+++GG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ 487493 184 KTRIRWTQDLHEKFVECVNRIGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 238 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.13 | 181 | 241 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-17 | 181 | 238 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-28 | 183 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-23 | 184 | 239 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.6E-8 | 188 | 237 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.7E-21 | 268 | 315 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDNINFEFSN ASQESRLQSQ PFNLQDLNMI QYNQPPSPWT TETFSGLSPY DCTANQSFPV 60 QCSSSKPYPS SFHPYHHQSS DPPSLDQSVS MLPMQPLPDQ YLKPFYQRSC ANDFAATNAS 120 SASYSLSFEA NHDPQELCRR TYSSSNVTHL NFSSLQPKQN HPRFSSPPSF STHGGSVAPN 180 CVNKTRIRWT QDLHEKFVEC VNRIGGADKA TPKAILKLMD SDGLTIFHVK SHLQKYRIAK 240 YMPESQEGKF EKRACAKELS QLDTRTGVQI KEALQLQLDV QRHLHEQLEI QRNLQLRIEE 300 QGKQLKMMME QQQKTKKSLL KPPDAEASLC LLASDDSPPS PFLVQDTEAL MLTSYEDTQL 360 QSKIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-23 | 184 | 241 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-23 | 184 | 241 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-23 | 184 | 241 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-23 | 184 | 241 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-23 | 184 | 241 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-23 | 184 | 241 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-23 | 184 | 241 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-23 | 184 | 241 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 487493 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226644 | 0.0 | AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11. | |||
GenBank | BT012658 | 0.0 | BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878981.1 | 0.0 | myb family transcription factor PHL5 | ||||
Swissprot | Q0WVU3 | 0.0 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | D7LZU1 | 0.0 | D7LZU1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__627__AT5G06800.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 487493 |
Entrez Gene | 9309349 |