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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
487432 |
Common Name | ARALYDRAFT_487432 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
B3 |
Protein Properties |
Length: 276aa MW: 30629.9 Da PI: 7.0494 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
487432 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 110.8 | 6.1e-35 | 45 | 157 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k ltpsdv+k++rlv+pk++ae++ +++e+++ l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++++++
487432 45 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssaatdTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDS 147
99**********************************99996667899**************************************************988899 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
++l+++++r+
487432 148 RRLFIGWRRR 157
99******97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MSVNHYSTDH HHTLLWQQQH RHTTDTTETT TTATWLHDDL KESLFEKSLT PSDVGKLNRL 60 VIPKQHAEKY FPLNAVVVSS AATDTSSSEK GMLLSFEDES GKSWRFRYSY WNSSQSYVLT 120 KGWSRFVKDK QLDPGDVVFF QRHRSDSRRL FIGWRRRGQG SSSAAATNSA VNMSSMGALS 180 YHQIHATSNY SNPPSHSEYS HYGAAVATAA ETHSTPSSSV VGSSRTVRLF GVDLECQMDE 240 NDGDDSVTAA ATTVDLPMVT TAKTCTIITL ILIIW*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 4e-52 | 41 | 157 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-52 | 41 | 157 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB006700 | 0.0 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |