 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
486980 |
| Common Name | ARALYDRAFT_486980 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
TALE |
| Protein Properties |
Length: 576aa MW: 61847.5 Da PI: 7.9378 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 486980 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28 | 3.6e-09 | 372 | 404 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
++yp+ +++ LAk++gL+ +qV++WF N R +
486980 372 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 404
89*****************************87 PP
|
| 2 | BELL | 112.6 | 2.2e-36 | 226 | 294 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
++ kkk+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY++lAlka+S+hF+cLk+ai++q+
486980 226 DNGKKKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYATLALKALSKHFKCLKNAITDQL 294
5789**************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010076 | Biological Process | maintenance of floral meristem identity |
| GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
| GO:0010089 | Biological Process | xylem development |
| GO:0010154 | Biological Process | fruit development |
| GO:0010223 | Biological Process | secondary shoot formation |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048457 | Biological Process | floral whorl morphogenesis |
| GO:0048645 | Biological Process | organ formation |
| GO:0080006 | Biological Process | internode patterning |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 576 aa
Download sequence Send
to blast |
MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPSSSGG GGGVFPLADS DFLAAGGFHS 60
NNNTNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA GLSSGDVLVF KPEPLSLSLS 120
SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA 180
QMLLDEFCNV GRGIYTDKVI DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE 240
VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YATLALKALS KHFKCLKNAI TDQLQFSHNN 300
KIQQQQCGHP MNSENKTDSL RFGGSDSSRG FCSAGQRHGF PDHHAPVWRP HRGLPERAVT 360
VLRAWLFDHF LHPYPTDTDK LMLAKQTGLS RNQVSNWFIN ARVRVWKPMV EEIHTLETRQ 420
SQRSSSSSWR DERTSTTVFP DNNNNNPSSS AVQQRANNSP PARRARNDDV HSTTNNSYVN 480
SGSGGGGSAV GFSYGIGSSN VPVMNNSTNG VSLTLGLHHQ IGLPEPFPMT TAQRFGLDGG 540
SGDGGGGGGY EGQNRQFGRD FIGGSNPQFL HDFVG*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ519491 | 0.0 | AJ519491.1 Arabidopsis thaliana mRNA for homeodomain protein vaamana (vaamana gene). |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Khan M, et al.
Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
Plant Physiol., 2015. 169(3): p. 2166-86
[PMID:26417006] - Andrés F, et al.
Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
Plant Physiol., 2015. 169(3): p. 2187-99
[PMID:26417007] - Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
Dev. Cell, 2016. 39(2): p. 198-208
[PMID:27666746] - Sehra B,Franks RG
Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
Front Plant Sci, 2017. 8: p. 1712
[PMID:29085379] - Simonini S,Stephenson P,Østergaard L
A molecular framework controlling style morphology in Brassicaceae.
Development, 2018.
[PMID:29440299]
|
