PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486939
Common NameARALYDRAFT_486939
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 314aa    MW: 37283.7 Da    PI: 6.3934
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486939genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.22.9e-2548130186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W+ +e+++L+++r+e+++++ ++k++k lWe v++km+++gf rs++qCk+kw+nl +ryk+++++e +     ++++p++++++
    486939  48 QWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTRYKACETSEPDA---IRQQFPFYNEIQ 130
               7********************************************************************95...56689***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-445107IPR001005SANT/Myb domain
CDDcd122031.02E-2147109No hitNo description
SuperFamilySSF466894.53E-547126IPR009057Homeodomain-like
PfamPF138377.5E-2148132No hitNo description
Gene3DG3DSA:1.10.10.602.2E-448104IPR009057Homeodomain-like
PROSITE profilePS500908.00249105IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDRRNPFQHH HHHHQLHHHL IQQQQLPPPQ STTAAMDPGG GGDQRIPQWS IEETKELLAI  60
REELDQTFME TKRNKLLWEV VAAKMADKGF VRSAEQCKSK WKNLVTRYKA CETSEPDAIR  120
QQFPFYNEIQ SIFAGRMQRM LWSEATEPST SSKRKHHQFS SDEEEEEEVD EPNEDINEEL  180
LSLVETQKKE TEVITTSTST NPRKRAKKGK GVASGMKAET AGNTLKDILE DFMRQTVKME  240
KEWRDAWEMK EIEREKREKE WRRRMAELEE ERAAAERRWM EREEERRLRE EARAQKRDSL  300
IDALLNRLNR DHND
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap486939
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716770.0AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBankBT0289260.0BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875851.10.0trihelix transcription factor GT-3a
SwissprotQ9SDW01e-160TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLD7M7290.0D7M729_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.6__73__AT5G01380.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-137Trihelix family protein