PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486738
Common NameARALYDRAFT_486738
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 269aa    MW: 31037.4 Da    PI: 6.6201
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486738genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.83e-20109159159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYGqK+vk+s+fpr+Y         vkk+vers +dp+ v++tYeg+H+h+
  486738 109 LDDGYKWRKYGQKPVKDSPFPRNY--------DVKKRVERSFSDPSSVITTYEGQHTHP 159
             59**********************........8*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-2196161IPR003657WRKY domain
SuperFamilySSF1182901.7E-19102161IPR003657WRKY domain
PROSITE profilePS5081121.895104161IPR003657WRKY domain
SMARTSM007743.2E-25109160IPR003657WRKY domain
PfamPF031061.0E-13110159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MENIGVGMPF YDLGQTRVYS HFSDFHDLSA ERYPVGFMDL LGVHRHALTH SPLSSEKKRD  60
DEEEEEEEED GEEHQHKTNK RFKFTKSIEK TKMKVPKVSF ITKSEVLHLD DGYKWRKYGQ  120
KPVKDSPFPR NYDVKKRVER SFSDPSSVIT TYEGQHTHPR PVLIMPKDRS SRSSGSDSRS  180
HFGHFGLPTL PPQLLDYNNH QQQQQGPSPS SFETEYINRQ EKGIDRDDDD DHVVKKSRTR  240
DLLDGAGLVK DHGLLQDVVS SHIIKEEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-171021621078Probable WRKY transcription factor 4
2lex_A1e-171021621078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211551e-148AF421155.1 Arabidopsis thaliana WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
GenBankAL1625071e-148AL162507.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14.
GenBankCP0026861e-148CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882292.10.0probable WRKY transcription factor 68
SwissprotQ93WV61e-127WRK68_ARATH; WRKY transcription factor 68
TrEMBLD7LSW50.0D7LSW5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2730__AT3G62340.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150681619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.11e-116WRKY family protein