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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
486704 |
Common Name | ARALYDRAFT_486704 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
B3 |
Protein Properties |
Length: 305aa MW: 34577.6 Da PI: 8.8518 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
486704 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 106 | 2e-33 | 23 | 128 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
f+kv tpsdv+k++rlv+pk++ae++ ++++++ l +ed+sg+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d+ ++ +l++ +
486704 23 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnstTNDNNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSGNKDKLYIDW 125
89***************************9999455568889************************************************99888999***** PP
E-S CS
B3 97 frk 99
+r+
486704 126 RRR 128
998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MNQEDKEKPI EEASSSMERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDNSTTNDNN 60 KGLLLNFEDR SGNSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRDSGNKDK 120 LYIDWRRRPK IPDHHHHHHQ FAGAMFPRFY TFPHPQMPTN YESHNLYHRF HQRDLGIGYY 180 VRSMERSNPT AVIESVPVMM QRRAQVASMA SRGEKRLRLF GVDMECGGGG GGGGSVNSTE 240 EESSSSGGSM PRGGVSMVGA GSLLQLRLVS SDDESLVAME AASLEDHHFF TKKGKSSLSF 300 DLDR*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 6e-64 | 18 | 131 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 6e-64 | 18 | 131 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL138642 | 0.0 | AL138642.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14. |
GenBank | BT025866 | 0.0 | BT025866.1 Arabidopsis thaliana At3g61970 mRNA, complete cds. |
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |