PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486651
Common NameARALYDRAFT_486651
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 317aa    MW: 35655.5 Da    PI: 5.0762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486651genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-19100151156
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
             ++y+GVr+++ +g+++AeIrdps+   r+r++lg+f taeeAa a+++a+  l+g+
  486651 100 KKYRGVRQRP-WGKFAAEIRDPSS---RTRIWLGTFVTAEEAAIAYDRAAIHLKGH 151
             59********.**********965...4***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.31E-30100157No hitNo description
Gene3DG3DSA:3.30.730.103.6E-30101157IPR001471AP2/ERF domain
PfamPF008479.9E-12101151IPR001471AP2/ERF domain
SMARTSM003802.7E-34101164IPR001471AP2/ERF domain
PROSITE profilePS5103221.799101158IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21101158IPR016177DNA-binding domain
PRINTSPR003671.6E-10102113IPR001471AP2/ERF domain
PRINTSPR003671.6E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MERRTRRVKF TEHRTVTNVA AKPSNGSPRL VRITVTDPFA TDSSSDDDDN NVTMAPRVKR  60
YVEEIRFCQG ESSSTAARKA KHKAEKAVVV DDVSTSVKPK KYRGVRQRPW GKFAAEIRDP  120
SSRTRIWLGT FVTAEEAAIA YDRAAIHLKG HKALTNFLTP PTTTTPTPVI DLQTVSACDS  180
GRDFRQSLRS PTSVLGFNVN EETEHEIEPI ELSPEKKSTV LKEEEESSAS LVFPDPYLLP  240
DFSLAGECFW DTEIAPDLLF LDEEIKIQST LANTETSKQG ENESEDFSFS LIDDFESSSW  300
DVDNFFDHHR HHHSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2398157262ATERF1
3gcc_A4e-2398157262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486651
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329590.0AL132959.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F15G16.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882405.10.0ethylene-responsive transcription factor CRF6
SwissprotQ9M3740.0CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLD7LSC30.0D7LSC3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2643__AT3G61630.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-145cytokinin response factor 6