PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 4866
Common NameMICPUCDRAFT_4866
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 285aa    MW: 32790 Da    PI: 5.993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
4866genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-067699125
             --S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
             +kt  C ff + G C  G rCkF+H
     4866 76 PKTIACEFFKK-GRCAKGWRCKFSH 99
             6999*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.55475102IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-575101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-676100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-577101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.422153191IPR000571Zinc finger, CCCH-type
SMARTSM003565.3154190IPR000571Zinc finger, CCCH-type
PfamPF165431.8E-11215283IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
DKIFGLKNKN TSKHAQDFVK DVERNMKVLP GEQQKAEAKR RENEKLKLAK IQAEKELEEM  60
MGELIKQPKV PEGVDPKTIA CEFFKKGRCA KGWRCKFSHE KKSARAEAAK ADLFMDLRDE  120
ETKAKDADAM EDWDQTKLES VVSEKHGGEN QNNKTNITCR HFLEAVEKRL YGWFWVCPNG  180
GDECKYRHAL PPGYVLKSQI AAMLAEEKEA QRTEEEMLEE ERGKMSEGTL VTEAHFAIWK  240
KERDARRRES IEAAKEKRHA EGRLSGRELC ETGEDPFAVD DDDLD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056781.10.0predicted protein, partial
TrEMBLC1MP950.0C1MP95_MICPC; Predicted protein (Fragment)
STRINGXP_003056781.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP326744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.16e-75C3H family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]