PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486583
Common NameARALYDRAFT_486583
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28054.7 Da    PI: 7.034
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486583genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.8e-30959151
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            krienk+ rqvtfskR+ g+lKKA+ELSvLCdaev++iifs+ gklye+s+
  486583  9 KRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSNGGKLYEFSN 59
            79***********************************************95 PP
2K-box84.13.1e-2880170898
   K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
             + + ++++ l+qe++kLk+++e+L r++R+l+GedLe +slkeLq Le+qLe +l+  R++K+++ +eq+eel++ke+el ++n++L+ + 
  486583  80 NDTLEDTQGLRQEVTKLKSKYESLLRTHRNLVGEDLEGMSLKELQTLERQLEGALSATRKHKTQVAMEQMEELRRKERELGDINNKLKLET 170
             45667789*******************************************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.24161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002656.46E-40278No hitNo description
SuperFamilySSF554553.53E-31275IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014866.9E-2585169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.2286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFSN GGKLYEFSNV  60
GVGRTIERYY RCKNNLLDNN DTLEDTQGLR QEVTKLKSKY ESLLRTHRNL VGEDLEGMSL  120
KELQTLERQL EGALSATRKH KTQVAMEQME ELRRKERELG DINNKLKLET EDHDFRGFQD  180
LLLNPVLTAG CSTDFAFQSS HQNYILDCDV GYFLPIGFQQ HYEQGEGSSV SKSNARSDVE  240
TNFVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-19184186Myocyte-specific enhancer factor 2B
1tqe_Q1e-19184186Myocyte-specific enhancer factor 2B
1tqe_R1e-19184186Myocyte-specific enhancer factor 2B
1tqe_S1e-19184186Myocyte-specific enhancer factor 2B
6c9l_A1e-19184186Myocyte-specific enhancer factor 2B
6c9l_B1e-19184186Myocyte-specific enhancer factor 2B
6c9l_C1e-19184186Myocyte-specific enhancer factor 2B
6c9l_D1e-19184186Myocyte-specific enhancer factor 2B
6c9l_E1e-19184186Myocyte-specific enhancer factor 2B
6c9l_F1e-19184186Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00417DAPTransfer from AT3G61120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap486583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU201830.0U20183.1 Arabidopsis thaliana MADS-box protein AGL13 (AGL13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882426.11e-180agamous-like MADS-box protein AGL13
SwissprotQ388371e-167AGL13_ARATH; Agamous-like MADS-box protein AGL13
TrEMBLD7LS601e-179D7LS60_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2575__AT3G61120.11e-180(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61120.11e-158AGAMOUS-like 13
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]