PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 486583 | ||||||||
Common Name | ARALYDRAFT_486583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28054.7 Da PI: 7.034 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.7 | 8.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskR+ g+lKKA+ELSvLCdaev++iifs+ gklye+s+ 486583 9 KRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSNGGKLYEFSN 59 79***********************************************95 PP | |||||||
2 | K-box | 84.1 | 3.1e-28 | 80 | 170 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + ++++ l+qe++kLk+++e+L r++R+l+GedLe +slkeLq Le+qLe +l+ R++K+++ +eq+eel++ke+el ++n++L+ + 486583 80 NDTLEDTQGLRQEVTKLKSKYESLLRTHRNLVGEDLEGMSLKELQTLERQLEGALSATRKHKTQVAMEQMEELRRKERELGDINNKLKLET 170 45667789*******************************************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.46E-40 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-31 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.9E-25 | 85 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.22 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFSN GGKLYEFSNV 60 GVGRTIERYY RCKNNLLDNN DTLEDTQGLR QEVTKLKSKY ESLLRTHRNL VGEDLEGMSL 120 KELQTLERQL EGALSATRKH KTQVAMEQME ELRRKERELG DINNKLKLET EDHDFRGFQD 180 LLLNPVLTAG CSTDFAFQSS HQNYILDCDV GYFLPIGFQQ HYEQGEGSSV SKSNARSDVE 240 TNFVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-19 | 1 | 84 | 1 | 86 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00417 | DAP | Transfer from AT3G61120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 486583 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU20183 | 0.0 | U20183.1 Arabidopsis thaliana MADS-box protein AGL13 (AGL13) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882426.1 | 1e-180 | agamous-like MADS-box protein AGL13 | ||||
Swissprot | Q38837 | 1e-167 | AGL13_ARATH; Agamous-like MADS-box protein AGL13 | ||||
TrEMBL | D7LS60 | 1e-179 | D7LS60_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.5__2575__AT3G61120.1 | 1e-180 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4302 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61120.1 | 1e-158 | AGAMOUS-like 13 |
Link Out ? help Back to Top | |
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Phytozome | 486583 |
Entrez Gene | 9314431 |
Publications ? help Back to Top | |||
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