PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

486343

Common Name

ARALYDRAFT_486343

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 318aa MW: 36191.8 Da PI: 4.543

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
486343	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	19.9	1.6e-06	28	61	27	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 27 eieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +i+e e+k++eL++eN++Lk++le+l+ e++++k 486343 28 KIAEMENKSQELTKENRELKERLERLTGEIEEMK 61 68999**************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-4	24	61	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007005	Biological Process	mitochondrion organization
GO:0007031	Biological Process	peroxisome organization
GO:0005778	Cellular Component	peroxisomal membrane
GO:0009536	Cellular Component	plastid
GO:0016021	Cellular Component	integral component of membrane
GO:0031966	Cellular Component	mitochondrial membrane
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MADVENRAAK GISDYDQGGG KTTELERKIA EMENKSQELT KENRELKERL ERLTGEIEEM 60 KGVEAEMNQR FGEMEKEIEE YEEEKKALES VSTRAVELET EVSNLQDDLI TSLNGVDKTA 120 EEVAELKKAL AEKGEKLEGY EKEAEGLRKD RAEVEKRVRD LERKIGVLEV REMEEKSKKL 180 RLEEEMRELA DEKQREIDEL QKTVGALNLE LVKNVEELAK RKSEKKLTEE ALSVTQKREK 240 EMELEKEDLL KKVEEGNKTV FGLNERTMKP SNGVRDTNGS DQKGSMEAEF QWPVVAAGSV 300 GAAGLVAATL FVCYSKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in morphogenesis and proliferation of peroxisomes and mitochondria, independently from the previously defined pathway controlled by the FIS1-DRP3 complex. {ECO:0000269\|PubMed:22147290}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	486343

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL353032	0.0	AL353032.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10.
GenBank	AY088565	0.0	AY088565.1 Arabidopsis thaliana clone 7883 mRNA, complete sequence.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020880574.1	0.0	peroxisomal and mitochondrial division factor 1
Refseq	XP_020880575.1	0.0	peroxisomal and mitochondrial division factor 1
Refseq	XP_020880576.1	0.0	peroxisomal and mitochondrial division factor 1
Refseq	XP_020880577.1	0.0	peroxisomal and mitochondrial division factor 1
Swissprot	Q9LXR8	1e-177	PMD1_ARATH; Peroxisomal and mitochondrial division factor 1
TrEMBL	D7LW82	0.0	D7LW82_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.5__2335__AT3G58840.2	0.0	(Arabidopsis lyrata)

Link Out ? help Back to Top
Phytozome	486343
Entrez Gene	9314311

Publications ? help Back to Top
Hajduch M, et al. Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. Plant Physiol., 2010. 152(4): p. 2078-87 [PMID:20118269] Gardiner J,Overall R,Marc J Putative Arabidopsis homologues of metazoan coiled-coil cytoskeletal proteins. Cell Biol. Int., 2011. 35(8): p. 767-74 [PMID:21284606] Duncan O, et al. Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Plant Physiol., 2011. 157(3): p. 1093-113 [PMID:21896887] Aung K,Hu J The Arabidopsis tail-anchored protein PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1 is involved in the morphogenesis and proliferation of peroxisomes and mitochondria. Plant Cell, 2011. 23(12): p. 4446-61 [PMID:22147290] Frick EM,Strader LC Kinase MPK17 and the Peroxisome Division Factor PMD1 Influence Salt-induced Peroxisome Proliferation. Plant Physiol., 2018. 176(1): p. 340-351 [PMID:28931630] Frick EM,Strader LC They Can Handle the Stress: MPK17 and PMD1 act in a salt-specific pathway. Plant Signal Behav, 2018. 13(2): p. e1428518 [PMID:29377762]