PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486325
Common NameARALYDRAFT_486325, WRKY69
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 272aa    MW: 30179.2 Da    PI: 4.865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486325genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.1e-2970128259
             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
             +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY  +Hnh+
  486325  70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 128
             69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3061130IPR003657WRKY domain
PROSITE profilePS5081131.50264130IPR003657WRKY domain
SuperFamilySSF1182902.35E-2565130IPR003657WRKY domain
SMARTSM007746.4E-3469129IPR003657WRKY domain
PfamPF031061.1E-2471128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MHRRAIQESD DEEDETYNDV VPESPSSCED SKISKPTPKK SRRNVEKRVV SVPIADVEGS  60
KSRGEVYPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS RVDPSKLMIT  120
YACDHNHPFP SSSANNKSHH RSPVVLKTAK KEEEYEEEEE ELTVTAAEEP PAGLDLSHVD  180
SPLLLGGCYS EIGEFGWFYD ASISSSSGSS NFLDVTLERG LSLGQEEDES LFGDLGDLPD  240
CASVFRRGTV ATEEQHRRCD FGAIPFCDSS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2047131680Disease resistance protein RRS1
5w3x_D2e-2047131680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap486325
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842330.0AY084233.1 Arabidopsis thaliana clone 100465 mRNA, complete sequence.
GenBankBT0294700.0BT029470.1 Arabidopsis thaliana At3g58710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876476.10.0probable WRKY transcription factor 69 isoform X1
SwissprotQ93WV51e-180WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLD7LW680.0D7LW68_ARALL; WRKY DNA-binding protein 69
STRINGfgenesh2_kg.5__2317__AT3G58710.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.11e-172WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]