PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486095
Common NameARALYDRAFT_486095
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 302aa    MW: 34755.6 Da    PI: 5.1492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486095genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.71.1e-36421692128
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
             ppG+rF P+deel+ +yLk+  +g+k+++ +v i++v+iy+++P++L  k  k+++kew+f s+r k  + g++k+r+++ gyW+at  +k++ + ++  vg 
  486095  42 PPGYRFVPNDEELILHYLKPFSQGNKCSFLNVpINHVNIYESNPQQLSeKYEKGNDKEWFFISERTKIGEAGRNKKRVANGGYWNATVATKRIDA-GNGIVGY 143
             9****************************9999**************9444455788********999999**********************99.9999*** PP

     NAM 103 kktLvfykgrapkgektdWvmheyrl 128
             k +L +y g++p+g+k dW+mhey +
  486095 144 KISLEYYVGKQPNGVKGDWLMHEYWF 169
             ************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-4730190IPR003441NAC domain
PROSITE profilePS5100541.8541190IPR003441NAC domain
PfamPF023652.0E-1842167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAIPQRNKRK ARSSPEPPHN SDIPSSAADN FFSPSTNPFV FPPGYRFVPN DEELILHYLK  60
PFSQGNKCSF LNVPINHVNI YESNPQQLSE KYEKGNDKEW FFISERTKIG EAGRNKKRVA  120
NGGYWNATVA TKRIDAGNGI VGYKISLEYY VGKQPNGVKG DWLMHEYWFE SSDDNNNEKV  180
DHVLCKIYLT PTAAKKKKAE EEENEKLKKE EVVFKEEVKQ LDLHQSDQSH PHDIVYQPQS  240
FPYDLDHFSE LISFEQQPVI PEDFEDFLAD FIKPHPLDGD EESNNYGLFE GFFDTQGMIK  300
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-273619612174NAC domain-containing protein 19
3swm_B6e-273619612174NAC domain-containing protein 19
3swm_C6e-273619612174NAC domain-containing protein 19
3swm_D6e-273619612174NAC domain-containing protein 19
3swp_A6e-273619612174NAC domain-containing protein 19
3swp_B6e-273619612174NAC domain-containing protein 19
3swp_C6e-273619612174NAC domain-containing protein 19
3swp_D6e-273619612174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap486095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936540.0AB493654.1 Arabidopsis thaliana At3g56530 mRNA for hypothetical protein, partial cds, clone: RAAt3g56530.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878093.10.0NAC transcription factor 29
TrEMBLD7LVH10.0D7LVH1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2087__AT3G56530.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.11e-146NAC domain containing protein 64