PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 485843 | ||||||||
Common Name | ARALYDRAFT_485843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | SRS | ||||||||
Protein Properties | Length: 184aa MW: 20254.3 Da PI: 10.275 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 156.8 | 1.5e-48 | 36 | 173 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss. 104 +g++ C+dCGn+akk+C +eRCRtCCksrg++C thvkstW+p++ +r+ +++ s+rk++lk +kqs+++ + l++++s++e ++++ 485843 36 VGEKVCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRS----------------SSSPSERKKKLKLDKQSSANVSLLPTTTSRQERSFKEg 122 68999****************************************9998................34567777778889999999999999999999998878 PP DUF702 105 lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ 485843 123 LPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 173 *******************9868899***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.8E-42 | 38 | 172 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.3E-27 | 40 | 81 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.8E-29 | 123 | 171 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MLGLRNIILL PPPPQITTRL SPSPVNIAAV EDNNTVGEKV CRDCGNRAKK ECLFERCRTC 60 CKSRGYNCVT HVKSTWIPSS ATRSSSSPSE RKKKLKLDKQ SSANVSLLPT TTSRQERSFK 120 EGLPGKIEAP AVFKRTRVTA ISNNEQAEIG YQATVTISGH VFKGFLHYYG VDHNKAFPCL 180 SQK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 485843 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF446889 | 0.0 | AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. | |||
GenBank | AY052675 | 0.0 | AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879621.1 | 1e-135 | protein SHI RELATED SEQUENCE 6 | ||||
Swissprot | Q9M2U4 | 1e-116 | SRS6_ARATH; Protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | D7LUT8 | 1e-133 | D7LUT8_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.5__1835__AT3G54430.1 | 1e-134 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 1e-105 | SHI-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | 485843 |
Entrez Gene | 9312322 |
Publications ? help Back to Top | |||
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